Os01g0700200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromosome condensation regulator protein (Fragment).
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Os01g0700200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chromosome condensation regulator protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.69 | 0.724 | 5.54 | -0.284 | 1.11 | -2.89 | 1.09 | 4.47 | -0.74 | 7.35 | 15.83 | 15 | -- | -- |
| 253.67 | 0.742 | 5.61 | -0.914 | 1.07 | -3.2 | 1.62 | -- | -0.896 | 8.04 | 9.978 | 5 | -- | -- |
| 240.59 | 0.722 | 5.54 | -0.245 | 1.13 | -2.82 | -- | 4.63 | -0.744 | 7.1 | 16.18 | 14 | -- | -- |
| 258.59 | 0.749 | 5.62 | -0.933 | 1.12 | -2.91 | -- | -- | -0.938 | 7.11 | -11.45 | 4 | -- | -- |
| 282.39 | 0.783 | 5.55 | -0.0238 | -- | -3.28 | -- | 4.5 | -0.644 | -- | 16.51 | 199 | -- | -- |
| 339.39 | 0.864 | 5.72 | -1.5 | 1.59 | -- | -0.414 | -- | -1.35 | 5.04 | -- | -- | -- | -- |
| 339.74 | 0.863 | 5.72 | -1.49 | 1.59 | -- | -- | -- | -1.35 | 5.12 | -- | -- | -- | -- |
| 295.48 | 0.801 | 5.63 | -0.74 | -- | -3.45 | -- | -- | -0.847 | -- | 7.943 | 236 | -- | -- |
| 279.27 | 0.778 | 5.59 | -- | 1.09 | -3.36 | -- | -- | -0.783 | 7.59 | -10.24 | 4 | -- | -- |
| 471.82 | 1.01 | 5.74 | -1.44 | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
| 398.64 | 0.934 | 5.68 | -- | 1.56 | -- | -- | -- | -1.18 | 5.16 | -- | -- | -- | -- |
| 308.95 | 0.819 | 5.61 | -- | -- | -3.7 | -- | -- | -0.738 | -- | 12.51 | 236 | -- | -- |
| 526.4 | 1.07 | 5.7 | -- | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 2 | 227.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 19 | 236.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 24 | 238.11 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 31 | 239.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 33 | 239.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 37 | 239.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 43 | 240.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 52 | 241.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 53 | 241.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 59 | 241.48 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 60 | 241.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 63 | 241.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 68 | 241.72 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 70 | 241.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 77 | 242.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 79 | 242.06 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 93 | 243.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 110 | 244.27 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 112 | 244.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 147 | 247.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 162 | 247.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 169 | 247.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 213 | 249.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 216 | 249.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 218 | 249.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 222 | 249.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 225 | 249.53 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |
| 227 | 249.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 246 | 250.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 280 | 250.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 348 | 252.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 377 | 252.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 382 | 253.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 15 |
| 416 | 253.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 421 | 253.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 427 | 253.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 451 | 253.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 519 | 253.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 605 | 254.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 651 | 254.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 753 | 254.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 759 | 255.00 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 772 | 255.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 819 | 255.28 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 16 |
| 921 | 255.66 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 926 | 255.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |