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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0684900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chromosome condensation regulator protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0456) R2 : 0.106
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.718 (0.113) R2dE : 0.0848 R2E : 0.0961
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.192 (0.0986) R2dN8 : 0.0103 R2N8 : 0.0216
σ : 0.849
deviance : 332.4
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.73
memory length : 5451
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.32 0.821 3.34 1.56 0.506 -0.463 0.494 10.4 -0.237 3.32 30.81 1302 -- --
314.88 0.826 3.57 -0.392 0.557 0.667 0.0637 -- -0.305 3.25 31.2 2707 -- --
306.04 0.815 3.33 1.57 0.513 -0.468 -- 10.5 -0.237 3.56 30.8 1302 -- --
314.36 0.826 3.57 -0.398 0.537 0.783 -- -- -0.242 3.41 31.3 2682 -- --
320.25 0.833 3.33 1.65 -- -0.45 -- 11 -0.215 -- 30.8 1288 -- --
338.32 0.862 3.59 -0.15 0.606 -- 0.753 -- -0.383 3.16 -- -- -- --
340.08 0.864 3.59 -0.165 0.614 -- -- -- -0.388 3.41 -- -- -- --
329.4 0.845 3.56 -0.392 -- 0.772 -- -- -0.215 -- 31.1 5450 -- --
317.78 0.83 3.55 -- 0.557 0.73 -- -- -0.197 3.72 31.3 2682 -- --
361.27 0.888 3.59 -0.139 -- -- -- -- -0.371 -- -- -- -- --
340.8 0.864 3.59 -- 0.611 -- -- -- -0.369 3.42 -- -- -- --
332.4 0.849 3.55 -- -- 0.718 -- -- -0.192 -- 30.73 5451 -- --
361.78 0.888 3.59 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.22 humidity 80.0 720 < th dose dependent rect. 20 1
2 299.14 humidity 80.0 720 < th dose dependent rect. 19 3
4 301.03 humidity 50.0 14400 < th dose independent rect. 16 18
5 301.43 humidity 50.0 14400 > th dose independent rect. 16 1
7 301.61 humidity 50.0 14400 < th dose independent rect. 16 2
25 302.31 humidity 50.0 14400 > th dose independent rect. 16 6
29 302.38 humidity 50.0 14400 > th dose independent rect. 16 8
30 302.38 humidity 50.0 14400 > th dose independent rect. 16 13
32 302.39 humidity 50.0 14400 > th dose independent rect. 16 15
35 302.44 humidity 50.0 14400 > th dose independent rect. 16 11
46 303.55 temperature 30.0 14400 > th dose dependent rect. 18 1
75 303.58 humidity 50.0 14400 < th dose dependent rect. 17 17
76 303.94 humidity 70.0 720 < th dose independent rect. 19 13
77 304.12 temperature 25.0 720 > th dose dependent rect. 18 14
78 304.18 humidity 70.0 14400 < th dose independent rect. 19 1
83 304.68 temperature 25.0 720 > th dose dependent rect. 18 7
92 304.88 humidity 50.0 14400 < th dose dependent rect. 17 1
120 305.29 humidity 70.0 14400 < th dose independent rect. 19 12
140 305.60 humidity 70.0 14400 < th dose independent rect. 19 3
152 305.76 temperature 25.0 720 > th dose dependent rect. 19 2
154 305.80 temperature 30.0 14400 > th dose independent rect. 18 1
169 305.87 temperature 30.0 1440 < th dose independent rect. 16 5
173 305.96 temperature 30.0 1440 > th dose independent rect. 16 3
189 306.03 temperature 30.0 1440 < th dose independent rect. 16 13
191 306.04 temperature 30.0 1440 < th dose independent rect. 16 16
196 306.22 humidity 70.0 720 < th dose independent rect. 19 1
207 306.23 temperature 30.0 1440 < th dose independent rect. 16 11
212 306.30 temperature 30.0 1440 < th dose independent rect. 17 19
218 306.41 temperature 30.0 14400 < th dose independent rect. 18 4
220 306.45 temperature 30.0 14400 < th dose independent rect. 18 1
223 306.45 temperature 30.0 14400 < th dose independent rect. 18 6
225 306.47 temperature 30.0 14400 < th dose independent rect. 18 13
226 306.48 temperature 30.0 14400 < th dose independent rect. 18 9
227 306.49 temperature 30.0 14400 < th dose independent rect. 18 11
242 306.63 temperature 30.0 1440 > th dose independent rect. 17 19
247 306.67 humidity 70.0 4320 > th dose independent rect. 19 3
249 306.73 humidity 70.0 4320 > th dose independent rect. 19 5
257 306.77 humidity 70.0 4320 > th dose independent rect. 19 10
261 306.82 humidity 70.0 4320 > th dose independent rect. 19 8
263 306.87 radiation 10.0 14400 > th dose independent rect. 17 1
283 306.95 temperature 30.0 1440 < th dose independent rect. 10 1
287 306.97 humidity 70.0 720 < th dose dependent rect. 19 12
288 306.98 temperature 30.0 1440 > th dose independent rect. 10 1
317 307.21 temperature 25.0 4320 > th dose dependent rect. 22 1
322 307.31 temperature 30.0 1440 < th dose independent rect. 9 3
361 307.53 temperature 25.0 4320 < th dose independent rect. 6 1
362 307.53 temperature 30.0 1440 > th dose independent rect. 9 4
368 307.65 temperature 25.0 1440 > th dose dependent rect. 7 1
372 307.70 radiation 30.0 1440 < th dose independent rect. 15 17
373 307.71 precipitation 0.1 43200 > th dose dependent rect. 21 1
380 307.82 temperature 30.0 1440 > th dose dependent rect. 17 21
388 307.91 temperature 25.0 4320 > th dose independent rect. 5 2
390 307.93 temperature 25.0 1440 > th dose dependent rect. 3 5
397 307.99 temperature 30.0 1440 < th dose independent rect. 4 9
399 308.00 temperature 30.0 1440 < th dose independent rect. 2 11
402 308.01 temperature 30.0 1440 > th dose dependent rect. 13 1
423 308.09 precipitation 0.1 43200 > th dose dependent rect. 20 3
426 308.11 temperature 30.0 1440 < th dose independent rect. 7 6
438 308.15 temperature 30.0 1440 < th dose independent sin 10 NA
465 308.33 radiation 30.0 1440 < th dose independent rect. 15 1
467 308.33 humidity 70.0 720 > th dose independent rect. 19 8
488 308.36 radiation 20.0 1440 > th dose dependent rect. 15 17
494 308.41 humidity 80.0 14400 < th dose dependent rect. 18 1
503 308.47 temperature 30.0 1440 > th dose independent sin 9 NA
511 308.52 precipitation 0.1 43200 > th dose independent rect. 20 2
515 308.54 precipitation 0.1 43200 < th dose independent rect. 20 2
516 308.54 precipitation 0.1 43200 < th dose dependent rect. 20 2
523 308.56 temperature 30.0 1440 > th dose dependent rect. 10 9
560 308.63 temperature 20.0 270 > th dose dependent rect. 24 8
604 308.69 temperature 30.0 1440 > th dose dependent no NA NA
712 308.71 temperature 30.0 1440 > th dose dependent sin 21 NA
759 308.87 wind 9.0 43200 < th dose independent rect. 19 11
788 308.97 radiation 30.0 1440 < th dose independent rect. 15 3
792 308.97 humidity 80.0 14400 < th dose dependent rect. 17 13
796 309.00 radiation 30.0 1440 < th dose independent rect. 15 7
802 309.02 radiation 30.0 1440 > th dose dependent rect. 15 2
808 309.02 temperature 30.0 720 < th dose dependent rect. 19 8
821 309.03 radiation 30.0 1440 < th dose independent rect. 15 12
835 309.08 radiation 30.0 1440 < th dose independent rect. 15 9
859 309.11 wind 9.0 43200 > th dose independent rect. 19 11
860 309.11 radiation 30.0 1440 < th dose independent rect. 15 14
861 309.11 temperature 30.0 1440 > th dose dependent sin 10 NA
930 309.35 radiation 10.0 14400 > th dose independent rect. 14 16
939 309.40 radiation 10.0 14400 > th dose independent rect. 14 4