BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0638900 Os02g0638900|AK111517
(479 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0638900 WD40-like domain containing protein 902 0.0
Os04g0678300 WD40-like domain containing protein 367 e-101
Os11g0187000 WD40-like domain containing protein 269 4e-72
Os12g0178633 Quinonprotein alcohol dehydrogenase-like domai... 268 5e-72
Os03g0115400 WD40-like domain containing protein 219 5e-57
Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-l... 211 9e-55
Os04g0417800 WD40-like domain containing protein 191 1e-48
Os02g0539900 WD40-like domain containing protein 190 2e-48
Os04g0529400 WD40-like domain containing protein 134 1e-31
>Os02g0638900 WD40-like domain containing protein
Length = 479
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/479 (92%), Positives = 443/479 (92%)
Query: 1 MGLSGDPSLARFERGRSAPCDAVGPLPSSPVARSRSSGATPASAAKPPLGGGRLRGASSD 60
MGLSGDPSLARFERGRSAPCDAVGPLPSSPVARSRSSGATPASAAKPPLGGGRLRGASSD
Sbjct: 1 MGLSGDPSLARFERGRSAPCDAVGPLPSSPVARSRSSGATPASAAKPPLGGGRLRGASSD 60
Query: 61 VSDATLEAVEEDPRCLIRNLDDGSEFLVREEFGLREVGTGRQLTMEEFELFIGRSPIVQE 120
VSDATLEAVEEDPRCLIRNLDDGSEFLVREEFGLREVGTGRQLTMEEFELFIGRSPIVQE
Sbjct: 61 VSDATLEAVEEDPRCLIRNLDDGSEFLVREEFGLREVGTGRQLTMEEFELFIGRSPIVQE 120
Query: 121 LMRRXXXXXXXXXXXXXXGASTPIERXXXXXXXXXARYKRRNSWLRSLRSAAGSMVTYTR 180
LMRR GASTPIER ARYKRRNSWLRSLRSAAGSMVTYTR
Sbjct: 121 LMRRQSVVNSNSNSNSQSGASTPIERSSSGSSNGGARYKRRNSWLRSLRSAAGSMVTYTR 180
Query: 181 DRRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRVKVRQYGKSYKELSGLFMNQDIK 240
DRRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRVKVRQYGKSYKELSGLFMNQDIK
Sbjct: 181 DRRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRVKVRQYGKSYKELSGLFMNQDIK 240
Query: 241 AHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWKMIEEKGLEENGVFDPESMLVSTAS 300
AHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWKMIEEKGLEENGVFDPESMLVSTAS
Sbjct: 241 AHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWKMIEEKGLEENGVFDPESMLVSTAS 300
Query: 301 EGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSEKPVITFAGHSEDVLDXXXXXXXXX 360
EGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSEKPVITFAGHSEDVLD
Sbjct: 301 EGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSEKPVITFAGHSEDVLDLSWSKSQYL 360
Query: 361 XXXXMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKVRIWSIQERK 420
MDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKVRIWSIQERK
Sbjct: 361 LSSSMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKVRIWSIQERK 420
Query: 421 IVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYDISVCSREFFKGHHHICRFTNSSY 479
IVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYDISVCSREFFKGHHHICRFTNSSY
Sbjct: 421 IVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYDISVCSREFFKGHHHICRFTNSSY 479
>Os04g0678300 WD40-like domain containing protein
Length = 819
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/407 (50%), Positives = 256/407 (62%), Gaps = 37/407 (9%)
Query: 74 RCLIRNLDDGSEFLVRE--EFGLREVGTGRQLTMEEFELFIGRSPIVQELMRRXXXXXXX 131
+C IRNLDDG+EF V E + +REVGTGRQLT EEFEL IGRSPIVQELMRR
Sbjct: 175 QCRIRNLDDGTEFEVGEVHDEVVREVGTGRQLTFEEFELCIGRSPIVQELMRRATTAASS 234
Query: 132 XXXXXXXGASTPIERXXXXXXXXXARYKRRNSWLRSLRSAAGSMVTYTRD---RRSSDEK 188
AS P ++ WLR +R AGS V Y R R +++
Sbjct: 235 STSDHAAPASKP--------------RRKPGGWLRGIRHLAGS-VAYGRSSTDERDKEKE 279
Query: 189 DTSSDKGGHRSSSATDDSQDGVANHGPDRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWS 248
++ R SSATDDS DG + RV+VRQYGK+ KEL+GLFM Q++ AHSGSIW
Sbjct: 280 KEKKEREARRLSSATDDSLDGNGSRNAGRVRVRQYGKACKELTGLFMTQELAAHSGSIWC 339
Query: 249 IKFSPDGHFLASAGEDCVIHVWEVLEWK----------MIEEKG------LEENGVFDPE 292
I FS DG +LASAGED VIHVWEV E + + E G L G PE
Sbjct: 340 INFSLDGRYLASAGEDRVIHVWEVSEGERKGELLGEGTVARENGGGCSPFLAAVGNGSPE 399
Query: 293 -SMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSEKPVITFAGHSEDVLD 351
+ L + ++G EKK R + +++SV SD L+VPE VF +KPV + GH+ DVLD
Sbjct: 400 LATLSLSCADGGFVEKKRRPRMQSSRKSVGSDHLVVPECVFGFRDKPVCSLLGHAADVLD 459
Query: 352 XXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKV 411
MDKTV+LW ++++ CLKTFSH+DYVTCIQFNPV+D +FISGSLD+KV
Sbjct: 460 LSWSKSQYLLSSSMDKTVKLWDITTSTCLKTFSHTDYVTCIQFNPVDDNFFISGSLDEKV 519
Query: 412 RIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYDIS 458
RIW++ +RKI DW DLHEM+TAACY+PDGQ ALVGSHKG CH++D +
Sbjct: 520 RIWNVHDRKIEDWNDLHEMVTAACYSPDGQVALVGSHKGSCHLFDTT 566
>Os11g0187000 WD40-like domain containing protein
Length = 1391
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 166/446 (37%), Positives = 238/446 (53%), Gaps = 67/446 (15%)
Query: 54 LRGASSDVSDATLEAVEEDPRCLIRNLDDGSEFLVREE-------FGLREVGTGRQLTME 106
LR A+ S L A +++ +R LDDG EF+V + L ++ TG QL+++
Sbjct: 230 LRAAARSRSPLPLPAPKDERENTVRKLDDGKEFVVSGQPAAGGSRGALSDLKTGVQLSLD 289
Query: 107 EFELFIGRSPIVQELMRRXXXXXXXXXXXXXXGASTPIERXXXXXXXXXARYKRRNSWLR 166
EFE FIG +P V++LMRR S P+ + K R WL+
Sbjct: 290 EFERFIGYTPFVKQLMRRSQ--------------SQPVAAGAANGDAKPGKKKPR--WLK 333
Query: 167 SLR---SAAGSMVTYTRDRRSSDEK------------DTSSDKGGHRSSSA-TDDSQDGV 210
+++ SAAG + ++ + + G S SA T+ +
Sbjct: 334 NIKLVASAAGLIQEKYKESNCGGGGCGRSSSSSSSSAEQAHQPGVTMSKSASTNAATMAS 393
Query: 211 ANHGPDRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVW 270
++ +R KV +GK+ +EL+G++ Q+++AH GSIWSIKFSPDG FLAS GED
Sbjct: 394 SSSSLERPKVHSFGKTARELTGMYFRQEVRAHEGSIWSIKFSPDGRFLASGGED------ 447
Query: 271 EVLEWKMIEEKGLEENGVFDPESM---LVSTASE------------GSHREKKLRAKAVH 315
+++ + ++G P SM L+S++ + +KLRA+
Sbjct: 448 -----RVVHVWHVVDDGA-PPSSMSPELLSSSQSLPPLAPHGDGGLAAQLSRKLRARRWK 501
Query: 316 NQRSVSSDRLMVPEHVFALSEKPVITFAGHSEDVLDXX-XXXXXXXXXXXMDKTVRLWHV 374
+ V + ++VPE FAL+++P + GH +DVLD MDKTVRLW
Sbjct: 502 TCKDVLPEHVVVPETAFALADEPACSLEGHLDDVLDLAWSMYSQLLLSSSMDKTVRLWDT 561
Query: 375 SSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAA 434
+ CLK F H+DYVTC+QFNPV+D YFISGSLD KVRIWS+ ER++VDW DL +M+TAA
Sbjct: 562 EAKACLKLFPHNDYVTCVQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAA 621
Query: 435 CYTPDGQGALVGSHKGKCHVYDISVC 460
CYTPDGQ A+VGSHKG C Y + C
Sbjct: 622 CYTPDGQAAIVGSHKGSCRFYKTADC 647
>Os12g0178633 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 627
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 207/366 (56%), Gaps = 25/366 (6%)
Query: 99 TGRQLTMEEFELFIGRSPIVQELMRRXXXXXXXXXXXXXXGASTPIERXXXXXXXXXARY 158
TG QL +EE E FIG +PIV+ LMRR G + P A
Sbjct: 71 TGVQLGLEEIEKFIGNTPIVKHLMRRGQSQHHSGQLASPSGGAPP-------KAEKPAGG 123
Query: 159 KRRNSWLRSLRSAAGSMVTYTRDRRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRV 218
K++ WL++++S A + S S+ S+ A S + +R+
Sbjct: 124 KKKGGWLKNIKSVAIGFI-------DSGGNSKSTTSTTTSSAGANATSSSSSSASSTERL 176
Query: 219 KVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWKMI 278
KV Q GKS KEL+GL+M Q+I AH GSIWSIKFS DG +LASAGED V+ +W+V+E
Sbjct: 177 KVHQSGKSCKELTGLYMCQEIMAHEGSIWSIKFSTDGRWLASAGEDHVVRIWQVVE--AN 234
Query: 279 EEKGLEENG-------VFDPESMLVSTASEGSHREKKLRAKAVHNQ--RSVSSDRLMVPE 329
L +G + T+S + +L K+V + R + L+VP+
Sbjct: 235 SPACLPNDGHSGPLPPHPPGAAPADGTSSSSTPALSQLSKKSVKGKSGRDTLPEHLVVPD 294
Query: 330 HVFALSEKPVITFAGHSEDVLDXXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYV 389
VFAL+++P GH +DVLD MDKTVRLW ++ CLK F+H+DYV
Sbjct: 295 KVFALADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKACLKVFAHNDYV 354
Query: 390 TCIQFNPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHK 449
TCIQFNP +D++FISGSLD KVR+WSI +R++VDW DL+EM+TAA YTPDGQGA++GSHK
Sbjct: 355 TCIQFNPADDRFFISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIGSHK 414
Query: 450 GKCHVY 455
G C Y
Sbjct: 415 GSCRFY 420
>Os03g0115400 WD40-like domain containing protein
Length = 746
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 153/248 (61%), Gaps = 8/248 (3%)
Query: 216 DRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEW 275
DRVKVR Y K KELS ++ QDIKAH G+I ++KFS DG +LA+ GED V+ VW V+E
Sbjct: 247 DRVKVRHYKKRSKELSAVYRGQDIKAHEGAIVTMKFSSDGQYLATGGEDGVVRVWRVVEG 306
Query: 276 KMIEEKGLEENGVFDPESML--VSTASEGSHREKKLRAKAVHNQRS-VSSDR--LMVPEH 330
+ E E+ DP + V+ SE + +K+ H + S VS+D +++P
Sbjct: 307 ERPNELDFAED---DPSCVFFTVNENSELAPVNSSEGSKSKHYKNSKVSTDPACVVIPHR 363
Query: 331 VFALSEKPVITFAGHSEDVLDXXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYVT 390
FALS++PV F GH + +LD MDKTVRLW V CLK FSH++YVT
Sbjct: 364 TFALSQEPVHEFYGHDDAILDLSWSKNRDLLSSSMDKTVRLWQVGCNSCLKVFSHTNYVT 423
Query: 391 CIQFNPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKG 450
C+QF+P +D YFISG +D VRIW ++ ++VDW D E+ITA CY PDG+ A+VG+ G
Sbjct: 424 CVQFHPTSDNYFISGCIDGLVRIWDVRRCQVVDWADTKEIITAVCYRPDGKAAVVGTITG 483
Query: 451 KCHVYDIS 458
C YD S
Sbjct: 484 NCRHYDAS 491
>Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-like domain containing
protein
Length = 698
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 166/300 (55%), Gaps = 20/300 (6%)
Query: 159 KRRNSWLRSLRSAAGSMVTYTRDRRSSDEKDTSSDKGGHRSSSATDDSQDGVANHGPDRV 218
+RRN WLR L +A + D ++DE TSS +D Q G + +R+
Sbjct: 164 RRRNGWLRRLGVSACVV-----DSGAADEASTSS----------SDSEQIGAGRY--ERI 206
Query: 219 KVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWKMI 278
KV Y K KELS ++ Q IKAH G+I ++KFSPDG LA+ GED V+ VW V++ +
Sbjct: 207 KVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQSEDC 266
Query: 279 EEKGLEENGVFDPESMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSEKP 338
+ + + V+ A + EKK + + S ++VP VF +SE+P
Sbjct: 267 KIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKSDSAC---IVVPTMVFQISEEP 323
Query: 339 VITFAGHSEDVLDXXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVN 398
V F GHS DVLD DKTVR+W + C++ + HS++VTC+QFN +
Sbjct: 324 VHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTCVQFNLAD 383
Query: 399 DKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYDIS 458
+ FISGS+D K+R+W I +VDW+D+ +++TA CY P G+G +VG+ G C Y+IS
Sbjct: 384 ENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPGGKGVVVGTITGNCRFYEIS 443
>Os04g0417800 WD40-like domain containing protein
Length = 680
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 139/244 (56%), Gaps = 15/244 (6%)
Query: 215 PDRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLE 274
P R KV+ K E S + + Q+I+AH G I +KFSP G +LA+ GEDC++ +W+++E
Sbjct: 227 PSRTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIME 286
Query: 275 WKMIEEKGLEENGVFDPESMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFAL 334
E + +G +P++ + K+ R + +VP+ F +
Sbjct: 287 ----VEASSKLHGGDNPQNY-----------DDKITIIKTELGRGKNHALAVVPKKGFRI 331
Query: 335 SEKPVITFAGHSEDVLDXXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYVTCIQF 394
SE P+ F GH++D+LD DK VRLW V CL F H DYVTC+QF
Sbjct: 332 SETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYVTCVQF 391
Query: 395 NPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHV 454
NP++++YFISGS+D KVR+W ++++VDW D ++ITA Y PDG+G +VG+ G+C
Sbjct: 392 NPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTSGECRF 451
Query: 455 YDIS 458
YD S
Sbjct: 452 YDQS 455
>Os02g0539900 WD40-like domain containing protein
Length = 672
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 140/242 (57%), Gaps = 23/242 (9%)
Query: 217 RVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEWK 276
R KV Q K + + + ++M Q+I+AH G I +KFS G LAS GEDCV+ VW++ E
Sbjct: 235 RTKVHQQNKKWMDFTAVYMCQEIQAHEGLIRVMKFSSSGWHLASGGEDCVVRVWQITE-- 292
Query: 277 MIEEKGLEENGVFDPESMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALSE 336
E + G PE M +++K ++ K + ++P+ VF+++E
Sbjct: 293 --VESSPDLYGRDVPEDM---------NKKKDVKIKPL----------AIIPKKVFSITE 331
Query: 337 KPVITFAGHSEDVLDXXXXXXXXXXXXXMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNP 396
P+ F GH+ DVLD D T+R+W V CL F H DYVTC+QFNP
Sbjct: 332 TPLHEFQGHTSDVLDLAWSKSDFLLSSSKDTTIRMWKVGCYDCLAVFRHGDYVTCVQFNP 391
Query: 397 VNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVYD 456
V+++YFISGS+D KVR+W + ++++VDW D +ITA + PDG+G +VGS KG+C YD
Sbjct: 392 VDERYFISGSIDGKVRVWDVSDKRVVDWDDTKYIITAISHRPDGKGFVVGSVKGRCRFYD 451
Query: 457 IS 458
S
Sbjct: 452 QS 453
>Os04g0529400 WD40-like domain containing protein
Length = 150
Score = 134 bits (338), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 389 VTCIQFNPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSH 448
VTCIQFNPV+D+YFISGSLD+KVRIWSI R+IVDW DLHEM+TAACYTPDGQ ALVGSH
Sbjct: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
Query: 449 KGKCHVYDIS 458
KG CH+YD S
Sbjct: 63 KGSCHIYDTS 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,567,351
Number of extensions: 715033
Number of successful extensions: 4144
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 9
Length of query: 479
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 374
Effective length of database: 11,553,331
Effective search space: 4320945794
Effective search space used: 4320945794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)