BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0605000 Os02g0605000|AK108680
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0605000 Cyclin-like domain containing protein 670 0.0
Os02g0607000 587 e-168
Os02g0604600 204 1e-52
Os02g0604800 201 7e-52
Os02g0607100 196 2e-50
Os02g0607400 194 1e-49
Os03g0607600 Similar to Cyclin 132 5e-31
Os02g0600301 127 2e-29
Os03g0208800 114 1e-25
Os12g0581800 Cyclin-like domain containing protein 114 2e-25
Os01g0233500 Cyclin 112 5e-25
Os03g0208700 107 2e-23
Os12g0502300 Similar to Cyclin A-like protein (Fragment) 105 9e-23
Os02g0604700 100 2e-21
Os02g0604725 98 1e-20
Os01g0805600 Similar to Cyclin IaZm (Fragment) 70 2e-12
Os05g0493500 Similar to B-type cyclin (Fragment) 67 2e-11
>Os02g0605000 Cyclin-like domain containing protein
Length = 446
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/446 (77%), Positives = 346/446 (77%)
Query: 1 MDSIMEPYVADLLADDITASMVELLPGDGGAAQMDVGVLDAYLRXXXXXXXXXXXXXXXX 60
MDSIMEPYVADLLADDITASMVELLPGDGGAAQMDVGVLDAYLR
Sbjct: 1 MDSIMEPYVADLLADDITASMVELLPGDGGAAQMDVGVLDAYLRAIGALPAHPAAPGADL 60
Query: 61 XXXXEVESMASNDDTNGVLYDWDTKVDVKXXXXXXXXXXXXXXXXXXXXXDEPVYXXXXX 120
EVESMASNDDTNGVLYDWDTKVDVK DEPVY
Sbjct: 61 AAAAEVESMASNDDTNGVLYDWDTKVDVKVPCALLPPPPGFPPLPVPGLADEPVYAAPAR 120
Query: 121 XXXXXXXXXXXXXXXXXDEXXXXXXXXXXXXXXXXXXXXXXXXXEPVYAAPVDEGDAIRA 180
DE EPVYAAPVDEGDAIRA
Sbjct: 121 HLPPPPGFPPLPVPGLADEPVYAAPARRLPPPPGFPPLPVPAKAEPVYAAPVDEGDAIRA 180
Query: 181 FMQQLEWSEQYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDT 240
FMQQLEWSEQYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDT
Sbjct: 181 FMQQLEWSEQYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDT 240
Query: 241 VQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXX 300
VQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSL
Sbjct: 241 VQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLVA 300
Query: 301 XXXXXXXXXXEDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV 360
EDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV
Sbjct: 301 ATAVYTAAKYEDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV 360
Query: 361 EHFTRYSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPW 420
EHFTRYSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPW
Sbjct: 361 EHFTRYSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPW 420
Query: 421 SSELQELTGYSSQDISSCILTVLNTQ 446
SSELQELTGYSSQDISSCILTVLNTQ
Sbjct: 421 SSELQELTGYSSQDISSCILTVLNTQ 446
>Os02g0607000
Length = 390
Score = 587 bits (1514), Expect = e-168, Method: Compositional matrix adjust.
Identities = 318/446 (71%), Positives = 326/446 (73%), Gaps = 56/446 (12%)
Query: 1 MDSIMEPYVADLLADDITASMVELLPGDGGAAQMDVGVLDAYLRXXXXXXXXXXXXXXXX 60
MDSIMEPYVADLLADDITASMVELL GDGGAAQMDVGVLDAYLR
Sbjct: 1 MDSIMEPYVADLLADDITASMVELLSGDGGAAQMDVGVLDAYLRAIGALPAHPAAPGADL 60
Query: 61 XXXXEVESMASNDDTNGVLYDWDTKVDVKXXXXXXXXXXXXXXXXXXXXXDEPVYXXXXX 120
EVESMASNDDTNG +WDTKVD K DEPVY
Sbjct: 61 AAAAEVESMASNDDTNG---NWDTKVDAKVPSAFLPPPPGFPPLPVPALADEPVY----- 112
Query: 121 XXXXXXXXXXXXXXXXXDEXXXXXXXXXXXXXXXXXXXXXXXXXEPVYAAPVDEGDAIRA 180
AAPVDEGDAIRA
Sbjct: 113 ------------------------------------------------AAPVDEGDAIRA 124
Query: 181 FMQQLEWSEQYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDT 240
FMQQLEWSEQYNGD+DAPAPD+S ASRPQLCAPYDDDIDANLR MEKDAA+RPSPDYLDT
Sbjct: 125 FMQQLEWSEQYNGDDDAPAPDDSMASRPQLCAPYDDDIDANLRAMEKDAAERPSPDYLDT 184
Query: 241 VQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXX 300
V GQISAA+RASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLS RALPSYT HQLSL
Sbjct: 185 VHNGQISAASRASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSARALPSYTEHQLSLVG 244
Query: 301 XXXXXXXXXXEDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV 360
EDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV
Sbjct: 245 ATAVYTAAKYEDQGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFV 304
Query: 361 EHFTRYSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPW 420
EHFTRYSKGKEELRVQRLA H+ADRSLESYGCLGYLPS+VAAA ISIARWTLNPPGALPW
Sbjct: 305 EHFTRYSKGKEELRVQRLARHIADRSLESYGCLGYLPSVVAAAVISIARWTLNPPGALPW 364
Query: 421 SSELQELTGYSSQDISSCILTVLNTQ 446
SSEL ELTGYSSQDISSC+LTVLNTQ
Sbjct: 365 SSELHELTGYSSQDISSCVLTVLNTQ 390
>Os02g0604600
Length = 1541
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 7/240 (2%)
Query: 197 APAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVA 256
A A +NS +RPQLCAPYDD+++A LR ME + A+RPSP +L+T QGG++SA RAS++A
Sbjct: 81 AVATENSAPTRPQLCAPYDDEVEATLRAMETNPAERPSPYFLETTQGGRMSALVRASMIA 140
Query: 257 WMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTV 316
+MG + + +LA GTL RA + DR+LSV S A QL L EDQ T+
Sbjct: 141 FMGEFSRKNKLADGTLQRAAYFLDRYLSVTP-ESDDALQLRLVGATAVFLAAKYEDQYTL 199
Query: 317 FKLDAREIASYGEFAS---AQEVLAMEREMMAALGYRLGGPNAETFVEHFTR-YSKGKEE 372
K+DA +A+ + S + V ME EM+AALG+ LGGP A TFVEHFTR Y G+EE
Sbjct: 200 RKIDASMVAARCGYTSETRHKMVSIMETEMLAALGFNLGGPTAYTFVEHFTRYYGDGEEE 259
Query: 373 LRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSS 432
+++ A VAD +L +YG YLPSMVAA++I +AR L+ G PWS++L ELT +S+
Sbjct: 260 KQLKEAAHRVADGTLLTYGFHRYLPSMVAASSIFLAR--LHELGHEPWSNDLAELTAFST 317
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 14/85 (16%)
Query: 354 PNAETFVEHFTRY-SKGKEELRVQRLACHVADRSLESYGCLGYLPSMVA-------AAAI 405
PN FVEHFTRY S+G+EELRVQRL +AD+SL +YGC P AA+I
Sbjct: 325 PN-RGFVEHFTRYNSRGEEELRVQRLERDIADQSLMNYGC----PRATCRPWRRRPAASI 379
Query: 406 SIARWTLNPPG-ALPWSSELQELTG 429
IAR +LN P + WS+ELQELTG
Sbjct: 380 FIARCSLNRPDRSGLWSTELQELTG 404
>Os02g0604800
Length = 400
Score = 201 bits (512), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 152/243 (62%), Gaps = 7/243 (2%)
Query: 201 DNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGR 260
+NS +RPQLCAPYDDDI+A LR ME + A+RPSP +L+T QGG+++A RAS++A+M
Sbjct: 138 NNSATTRPQLCAPYDDDIEATLRAMETNPAERPSPYFLETTQGGRMTALVRASMIAFMDE 197
Query: 261 LTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLD 320
+ YELA GTL RA + DR+LSV S QL L EDQ T+ K+D
Sbjct: 198 FSRFYELADGTLQRAAYFLDRYLSVTP-ESDDVLQLRLVGATAVFLAAKYEDQYTLRKID 256
Query: 321 AREIASYGEFAS---AQEVLAMEREMMAALGYRLGGPNAETFVEHFTR-YSKGKEELRVQ 376
A +A+ + S + V ME E++AAL Y L GP A TFV+HFTR Y GKEE ++
Sbjct: 257 ASMVAARCGYTSETRHKMVSCMETEILAALDYNLSGPTASTFVQHFTRYYGDGKEEELLK 316
Query: 377 RLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDIS 436
A D SL +YG YLPS+VAA+AI +AR L+ G PWS +L ELTGY + D+
Sbjct: 317 EAAHRFTDGSLLTYGFHRYLPSVVAASAIFLAR--LHVLGHEPWSRDLAELTGYEAIDLM 374
Query: 437 SCI 439
C+
Sbjct: 375 GCV 377
>Os02g0607100
Length = 400
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 157/243 (64%), Gaps = 7/243 (2%)
Query: 201 DNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGR 260
+++T +RPQLCAPYDD+I+A LR ME + A+RPSP +L+T QGG+++A RAS++A+M
Sbjct: 138 NSATTTRPQLCAPYDDEIEATLRAMETNPAERPSPYFLETTQGGRMTALVRASMIAFMDE 197
Query: 261 LTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLD 320
+ +ELA GTL RA + DR+LSV S A QL L EDQ T+ K+D
Sbjct: 198 FSQFHELADGTLQRAAYFLDRYLSVTP-ESDDALQLRLVGATAVFLAAKYEDQYTLRKID 256
Query: 321 AREIASYGEFAS---AQEVLAMEREMMAALGYRLGGPNAETFVEHFTR-YSKGKEELRVQ 376
A +A+ + S + V ME EM+AALG+ LGGP A TFVEHFTR Y G+EE ++
Sbjct: 257 ASMVAARCGYTSETRHKMVSIMETEMLAALGFNLGGPTAYTFVEHFTRYYGDGEEEELLK 316
Query: 377 RLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDIS 436
A AD SL +YG YLPS+VAA++I +AR L+ G PWS +L ELTGY + D+
Sbjct: 317 EAAHRFADGSLLTYGFHRYLPSIVAASSIFLAR--LDVLGHEPWSQDLAELTGYKAIDLM 374
Query: 437 SCI 439
C+
Sbjct: 375 GCV 377
>Os02g0607400
Length = 971
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 156/242 (64%), Gaps = 7/242 (2%)
Query: 201 DNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGR 260
+++T +RPQLCAPYDD+I+A LR ME + A+RPSP +L+T QGG+++A RAS++A+M
Sbjct: 596 NSATTTRPQLCAPYDDEIEATLRAMETNPAERPSPYFLETTQGGRMTALVRASMIAFMDE 655
Query: 261 LTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLD 320
+ +ELA GTL RA + DR+LSV S A QL L EDQ T+ K+D
Sbjct: 656 FSRFHELADGTLQRAAYFLDRYLSVTP-ESDDALQLRLVGATAVFLAAKYEDQYTLRKID 714
Query: 321 AREIASYGEFAS---AQEVLAMEREMMAALGYRLGGPNAETFVEHFTR-YSKGKEELRVQ 376
A +A+ + S + V ME EM+AALG+ LGGP A TFVEHFTR Y G+EE ++
Sbjct: 715 ASMVAARRGYTSETRHKMVSIMETEMLAALGFNLGGPTAYTFVEHFTRYYGDGEEEELLK 774
Query: 377 RLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDIS 436
A AD SL +YG YLPS+VAA++I +AR L+ G PWS +L ELTGY + D+
Sbjct: 775 EAAHRFADGSLLTYGFHRYLPSIVAASSIFLAR--LDVLGHEPWSQDLAELTGYKAIDLM 832
Query: 437 SC 438
C
Sbjct: 833 GC 834
>Os03g0607600 Similar to Cyclin
Length = 395
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 10/241 (4%)
Query: 209 QLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGRLTHRYELA 268
QLCAPY DI++ LR ME A +RP+ DY++TVQ ++A R LV W+ + Y+L
Sbjct: 98 QLCAPYASDINSYLRSMEVQAKRRPAADYIETVQVD-VTANMRGILVDWLVEVAEEYKLV 156
Query: 269 AGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLDAREIASYG 328
+ TL+ VSY DRFLS +++ +L L E+ D I
Sbjct: 157 SDTLYLTVSYIDRFLSAKSI---NRQKLQLLGVSAMLIASKYEEISPPNVEDFCYITDNT 213
Query: 329 EFASAQEVLAMEREMMAALGYRLGGPNAETFVEHFTRYSKGKEE---LRVQRLACHVADR 385
QEV+ MER+++ L + +G P +TF+ F R S+ ++ L ++ + ++A+
Sbjct: 214 YMK--QEVVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQEDDKYPSLPLEFMCSYLAEL 271
Query: 386 SLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDISSCILTVLNT 445
SL YGC+ LPS+VAA+ + +AR TL+ PWS +LQE+TGY + ++ CI + +
Sbjct: 272 SLLEYGCVRLLPSVVAASVVFVARLTLDSDTN-PWSKKLQEVTGYRASELKDCITCIHDL 330
Query: 446 Q 446
Q
Sbjct: 331 Q 331
>Os02g0600301
Length = 387
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 130/243 (53%), Gaps = 22/243 (9%)
Query: 214 YDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGRLTHRYE-LAAGTL 272
YD D+ A+LR ME A +R SPDY+ VQ G++ RASLVAWM +T + LAAGTL
Sbjct: 109 YDADLYASLRAMEMAAGERSSPDYMTAVQRGRVDPWTRASLVAWMEGITRGHAGLAAGTL 168
Query: 273 HRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLDAREIASYGEFAS 332
HRAV+Y DR+ SVR L + + L+L E +L A + A+
Sbjct: 169 HRAVAYVDRYQSVRPLEAVSHRLLALLGATAVFVAAKYEGDLPEERLSAGDAAAGAGAGG 228
Query: 333 A----QEVLAMEREMMAALGYRLGGPNAETFVEHFTR---YSKGKEELRVQRLACHVADR 385
EVL E +++ ALGYRLG P A TF +HF YS G V +A H+AD
Sbjct: 229 LAIARSEVLDRELDLLDALGYRLGRPTAHTFADHFLARYGYSGGDA---VHAVAHHLADL 285
Query: 386 SLESYGCLGYLPSMVAAAAISIARWT--------LNPPGALPWSSE-LQELTGYSSQDIS 436
+L L PS+VAA+A+ +AR+ L PP LPW + L+ +TGYS ++
Sbjct: 286 TLLDRRSLRIPPSVVAASAVYLARYAATTLADAGLPPP--LPWEDDGLEAVTGYSVVYLA 343
Query: 437 SCI 439
C+
Sbjct: 344 RCM 346
>Os03g0208800
Length = 406
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 28/254 (11%)
Query: 212 APYDDDIDANLRDMEK-------DAAQ--------RPSPDYLDTVQGGQISAAARASLVA 256
APY +DID LR +E DA Q RP +Y +QGG I+ R LV
Sbjct: 117 APYVEDIDRYLRSLEGREMAKCLDAVQFCTAEESRRPIVNYDQEIQGGHINM--RGKLVN 174
Query: 257 WMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTV 316
WM L + + L L+ AVSY DRFLS + +L L ED+
Sbjct: 175 WMEELVYGFNLWDNILYLAVSYVDRFLSRNVV---NRERLQLLGTSALFVASKYEDR--- 228
Query: 317 FKLDAREIASY-GEFASAQEVLAMEREMMAALGYRLGGPNAETFVEHFTRYSKGKEE--- 372
AR +S + + Q+V+AME +++ L +++G P TF+ F +G
Sbjct: 229 CHPSARFFSSITADTYTTQQVVAMEANILSFLNFQMGSPTVITFLRRFLFSCRGSNRPIN 288
Query: 373 LRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSS 432
+R++ + ++A+ SL + +LPS+VAAA + + ++TLN P PW+ +Q +TGY
Sbjct: 289 IRLELMCIYLAELSLLDDYNIRFLPSIVAAACLFVGKFTLN-PNTRPWNLSVQRITGYKV 347
Query: 433 QDISSCILTVLNTQ 446
DI CI ++ + Q
Sbjct: 348 SDIEDCIRSIHDLQ 361
>Os12g0581800 Cyclin-like domain containing protein
Length = 385
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 126/236 (53%), Gaps = 10/236 (4%)
Query: 214 YDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGRLTHRYELAAGTLH 273
Y DI LR ME +A ++ + DY++ VQ ++A RA LV W+ + Y+L A TL+
Sbjct: 115 YASDIYTYLRSMEVEARRQSAADYIEAVQVD-VTANMRAILVDWLVEVADEYKLVADTLY 173
Query: 274 RAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLDAREIASYGEFASA 333
AVSY DR+LS L ++L L E+ D I +
Sbjct: 174 LAVSYLDRYLSAHPL---RRNRLQLLGVGAMLIAAKYEEISPPHVEDFCYIT--DNTYTR 228
Query: 334 QEVLAMEREMMAALGYRLGGPNAETFVEHFTRYS---KGKEELRVQRLACHVADRSLESY 390
QEV+ ME +++ L + +G P +TF+ FTR K + L ++ + ++A+ SL Y
Sbjct: 229 QEVVKMESDILKLLEFEMGNPTIKTFLRRFTRSCQEDKKRSSLLLEFMGSYLAELSLLDY 288
Query: 391 GCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDISSCILTVLNTQ 446
GCL +LPS+VAA+ + +A+ ++P PWS ++Q+LTGY ++ CIL + + Q
Sbjct: 289 GCLRFLPSVVAASVVFVAKLNIDPYTN-PWSKKMQKLTGYKVSELKDCILAIHDLQ 343
>Os01g0233500 Cyclin
Length = 508
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 30/267 (11%)
Query: 189 EQYNGDNDAPAP---------DNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLD 239
E+ DAP+P DN+ PQLCA DI +LR+ E +RPS D+++
Sbjct: 207 EETKWKKDAPSPMEIDQICDVDNNYED-PQLCATLASDIYMHLREAE--TRKRPSTDFME 263
Query: 240 TVQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLX 299
T+Q ++ + RA L+ W+ + Y L TL+ V+Y DR+LS + +L L
Sbjct: 264 TIQKD-VNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEI---NRQRLQLL 319
Query: 300 XXXXXXXXXXXEDQGTVFKLDAREIASYGEFASAQ----EVLAMEREMMAALGYRLGGPN 355
E+ + A ++ + EVL ME ++ L + + P
Sbjct: 320 GVACMLIAAKYEE------ICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPT 373
Query: 356 AETFVEHFTRYSKGKEE---LRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTL 412
A+ F+ F R ++ +E L ++ LA +VA+ SL Y L Y PS+VAA+AI +A++ L
Sbjct: 374 AKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFIL 433
Query: 413 NPPGALPWSSELQELTGYSSQDISSCI 439
P PW+S L T Y S ++S C+
Sbjct: 434 Q-PTKHPWNSTLAHYTQYKSSELSDCV 459
>Os03g0208700
Length = 389
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 17/241 (7%)
Query: 193 GDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARA 252
G + P PD + + PY +DID LR +E + +RP +Y+ +QGG I+ R
Sbjct: 97 GGSRQPVPDAAQLA----VVPYVEDIDRYLRSLEAEQTRRPMINYVQEIQGGIINMDVRG 152
Query: 253 SLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXED 312
LV WM + + + L TLH AVSY DRFLS A P +L L E+
Sbjct: 153 ILVDWMADVAYVFNLQEETLHHAVSYVDRFLSKIAFP---GDKLKLLGTTALFVASKYEE 209
Query: 313 --QGTVFKLDAREIASYGEFASAQEVLAMEREMMAALGYRLGGPNAETFVEHFTRYSKG- 369
V A + +Y + Q+V ME +++ L + +G P TF+ F G
Sbjct: 210 IHPPHVRNFSAVTVNTY----TTQQVSKMELDILRFLNFDVGSPTVITFLRKFLTSCCGG 265
Query: 370 --KEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQEL 427
+++ + ++A+ SL + +LPS+VAAA + + ++TLN P PW + +
Sbjct: 266 NNSSNRKLELMCNYLAELSLLDDYYIRFLPSIVAAACLFVGKFTLN-PNTRPWFGSVSTI 324
Query: 428 T 428
T
Sbjct: 325 T 325
>Os12g0502300 Similar to Cyclin A-like protein (Fragment)
Length = 490
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 12/242 (4%)
Query: 208 PQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAAARASLVAWMGRLTHRYEL 267
PQ+CA Y +I NL M + +RP +Y++ +Q I+ R L+ W+ ++ Y+L
Sbjct: 221 PQMCASYASEIYTNL--MASELIRRPRSNYMEALQR-DITKGMRGILIDWLVEVSEEYKL 277
Query: 268 AAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXXXXEDQGTVFKLDAREIASY 327
TL+ ++ DRFLS + L + ++ +++ +
Sbjct: 278 VPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKY----EEICAPRVEEFCFITD 333
Query: 328 GEFASAQEVLAMEREMMAALGYRLGGPNAETFVEHFTRY---SKGKEELRVQRLACHVAD 384
+ A EVL ME ++ +G+ L P +TF+ F R S+ + + LA ++A+
Sbjct: 334 NTYTKA-EVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVPSITLGYLANYLAE 392
Query: 385 RSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDISSCILTVLN 444
+L Y L +LPS+VAA+A+ +ARWTL+ +PW+ L+ T Y S DI C+ +
Sbjct: 393 LTLIDYSFLKFLPSVVAASAVFLARWTLD-QSDIPWNHTLEHYTSYKSSDIQICVCALRE 451
Query: 445 TQ 446
Q
Sbjct: 452 LQ 453
>Os02g0604700
Length = 240
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%)
Query: 190 QYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISAA 249
Q D +++T +RPQLCAPYDDDI+A LR ME + +RPSP +L+T QGG+++A
Sbjct: 127 QERADQPVVTSNSATTTRPQLCAPYDDDIEATLRAMETNPVERPSPYFLETTQGGRMTAL 186
Query: 250 ARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLS 284
RAS++A+M + +ELA GTL RA + DR+ S
Sbjct: 187 VRASMIAFMDEFSRLHELADGTLQRAAYFLDRYSS 221
>Os02g0604725
Length = 200
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Query: 339 MEREMMAALGYRLGGPNAETFVEHFTR-YSKGKEELRVQRLACHVADRSLESYGCLGYLP 397
ME E++AAL Y LGGP A TFVEHFTR Y KGKEE ++ A AD SL +YG YLP
Sbjct: 1 METEILAALDYNLGGPTAYTFVEHFTRYYGKGKEEKLMREAAHWFADGSLLTYGFHRYLP 60
Query: 398 SMVAAAAISIARWTLNPPGALPWSSELQELTGYSSQDISS 437
SMVAA+AI +AR L+ G PW +L ELTG+ D+S+
Sbjct: 61 SMVAASAIFLAR--LHVRGHEPWRKDLAELTGFWYSDVST 98
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 11/101 (10%)
Query: 353 GPNAETFVEHFTRYSKGKEELR-----VQRLACHVADRSLESYGCL--GYLPSMVAA--- 402
GP A+TFVEHFTRY R +QRL VAD+SL +Y L +P++
Sbjct: 100 GPTADTFVEHFTRYKCTTAGERKSYGCMQRLERDVADQSLMNYVRLPGATIPAVHGGGGR 159
Query: 403 -AAISIARWTLNPPGALPWSSELQELTGYSSQDISSCILTV 442
A+IS+AR +LN AL WS+ELQELTGYS +D+ SCI +
Sbjct: 160 RASISVARCSLNRHDALVWSTELQELTGYSFEDLVSCIFAM 200
>Os01g0805600 Similar to Cyclin IaZm (Fragment)
Length = 328
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 189 EQYNGDNDAPAPDNSTASRPQLCAPYDDDIDANLRDMEKDAAQRPSPDYLDTVQGGQISA 248
++ +GDN+ D Y +DI + E + RP DY+DT +I++
Sbjct: 58 DKLDGDNELAVVD------------YIEDIYKFYKVAENEC--RPC-DYIDT--QVEINS 100
Query: 249 AARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPSYTAHQLSLXXXXXXXXXX 308
RA L W+ + H++EL TL+ ++ DR+LS++ + +L L
Sbjct: 101 KMRAILADWIIEVHHKFELMPETLYLSMYVIDRYLSMQQVQR---RELQLVGVSAMLIAC 157
Query: 309 XXEDQGTVFKLDAREIASYGEFASAQE-VLAMEREMMAALGYRLGGPNAETFVEHFTR-- 365
E+ ++ + + + A +E +LAME+ ++ L + L P A F+ + +
Sbjct: 158 KYEE---IWAPEVNDFILISDSAYTREQILAMEKGILNKLQWNLTVPTAYVFIMRYLKAG 214
Query: 366 -YSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIARWTLNPPGALPWSSEL 424
+ K + ++ +A A+ +L YG + LPS VAA+A+ AR TL W+ L
Sbjct: 215 ASADNKSDKEMEHMAFFFAELALMQYGLVASLPSKVAASAVYAARLTLKKSPL--WTDTL 272
Query: 425 QELTGYS-SQDISSCILTV 442
+ TG++ SQ + S L V
Sbjct: 273 KHHTGFTESQLLDSAKLLV 291
>Os05g0493500 Similar to B-type cyclin (Fragment)
Length = 449
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 231 QRPSPDYLDTVQGGQISAAARASLVAWMGRLTHRYELAAGTLHRAVSYFDRFLSVRALPS 290
+RP+ DY+ + +++ RA L W+ + +++EL TL+ + DR+LS++ +
Sbjct: 213 RRPT-DYMSS--QVEVNPKMRAILADWIIDVHYKFELMPETLYLTMYVIDRYLSLQPV-- 267
Query: 291 YTAHQLSLXXXXXXXXXXXXEDQGTVFKLDAREIASYGEFA-SAQEVLAMEREMMAALGY 349
+L L E+ ++ + +++ + A S Q +LAME+ ++ L +
Sbjct: 268 -LRRELQLVGVAAMLIASKYEE---MWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQW 323
Query: 350 RLGGPNAETFVEHFTRYSKGKEELRVQRLACHVADRSLESYGCLGYLPSMVAAAAISIAR 409
+ P F+ F + + G +EL + + ++ +L+ YG PS+VAA+A+ A+
Sbjct: 324 NITVPTPYVFLLRFIKAAGGDKEL--ENMVFFFSEMALKEYGMASLCPSLVAASAVYAAQ 381
Query: 410 WTLNPPGALPWSSELQELTGYSSQDISSCILTVLNTQ 446
TL W+S L+ TG++ + C ++N
Sbjct: 382 CTLKRSPL--WTSTLKHHTGFTESQLRECAKVLVNAH 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,223,064
Number of extensions: 445529
Number of successful extensions: 1256
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 21
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)