Os05g0493500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to B-type cyclin (Fragment).
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Os05g0493500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to B-type cyclin (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.8 | 0.798 | 3.66 | -1.53 | 0.213 | 0.522 | 0.711 | -2.71 | 0.171 | 6.52 | 29.79 | 136 | -- | -- |
| 297.29 | 0.803 | 3.64 | -1.5 | 0.168 | 0.984 | 1.59 | -- | 0.231 | 9.4 | 39.59 | 144 | -- | -- |
| 289.71 | 0.793 | 3.67 | -1.51 | 0.244 | 0.482 | -- | -2.68 | 0.175 | 5.06 | 29.77 | 134 | -- | -- |
| 304.62 | 0.813 | 3.64 | -1.53 | 0.243 | 0.887 | -- | -- | 0.159 | 5.02 | 39.99 | 145 | -- | -- |
| 292.47 | 0.797 | 3.67 | -1.51 | -- | 0.548 | -- | -2.68 | 0.174 | -- | 29.24 | 135 | -- | -- |
| 310.8 | 0.826 | 3.68 | -1.48 | 0.36 | -- | -1.58 | -- | 0.133 | 1.45 | -- | -- | -- | -- |
| 319.11 | 0.837 | 3.67 | -1.43 | 0.416 | -- | -- | -- | 0.139 | 3.21 | -- | -- | -- | -- |
| 305.38 | 0.814 | 3.64 | -1.47 | -- | 1.12 | -- | -- | 0.243 | -- | 40 | 235 | -- | -- |
| 360.81 | 0.885 | 3.62 | -- | 0.144 | 0.948 | -- | -- | 0.337 | 5.35 | 37.97 | 252 | -- | -- |
| 328.93 | 0.847 | 3.67 | -1.41 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 372.69 | 0.903 | 3.64 | -- | 0.388 | -- | -- | -- | 0.298 | 3.21 | -- | -- | -- | -- |
| 360.77 | 0.885 | 3.61 | -- | -- | 1.19 | -- | -- | 0.392 | -- | 40.65 | 258 | -- | -- |
| 381.23 | 0.911 | 3.63 | -- | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 277.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 6 | 278.62 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 278.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 9 | 279.05 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 19 | 279.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 26 | 279.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 42 | 279.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 44 | 279.65 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 48 | 279.69 | humidity | 80 | 43200 | > th | dose dependent | sin | 4 | NA |
| 78 | 280.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 79 | 280.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 83 | 280.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 88 | 280.15 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 90 | 280.17 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 122 | 280.33 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 126 | 280.37 | humidity | 80 | 43200 | > th | dose independent | sin | 1 | NA |
| 128 | 280.39 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 141 | 280.45 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 175 | 280.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 176 | 280.60 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 180 | 280.62 | humidity | 80 | 43200 | > th | dose dependent | sin | 17 | NA |
| 181 | 280.62 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 196 | 280.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 250 | 280.98 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 261 | 281.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 276 | 281.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 279 | 281.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 282 | 281.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 286 | 281.19 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 418 | 281.66 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 450 | 281.77 | humidity | 90 | 43200 | < th | dose independent | sin | 6 | NA |
| 502 | 281.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 542 | 282.04 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 588 | 282.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 594 | 282.19 | humidity | 80 | 43200 | < th | dose independent | sin | 0 | NA |
| 604 | 282.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 614 | 282.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 642 | 282.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 671 | 282.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 735 | 282.54 | humidity | 90 | 43200 | > th | dose independent | sin | 7 | NA |
| 786 | 282.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 851 | 282.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 905 | 283.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 941 | 283.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 950 | 283.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 958 | 283.22 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 976 | 283.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 11 |