Os02g0605000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os02g0605000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.85 | 0.627 | 2.91 | 0.302 | 0.105 | 8.44 | 1.01 | 23 | -0.0825 | 5.46 | 7.2 | 89 | 0.15 | 9.24 |
| 195 | 0.655 | 2.89 | 0.186 | 0.197 | 4.47 | 0.948 | -- | -0.108 | 4.72 | 7.301 | 98 | 0.886 | 9.11 |
| 178.76 | 0.623 | 2.91 | 0.292 | 0.158 | 8.58 | -- | 23.4 | -0.0859 | 2.61 | 7.2 | 89 | 0.27 | 9.27 |
| 188.89 | 0.644 | 2.89 | 0.17 | 0.228 | 5.74 | -- | -- | -0.117 | 2.7 | 7.599 | 92 | 1.37 | 8.99 |
| 177.98 | 0.621 | 2.91 | 0.261 | -- | 8.84 | -- | 24.4 | -0.0883 | -- | 7.852 | 86 | 0.433 | 9.35 |
| 219.77 | 0.695 | 2.89 | 0.126 | 0.21 | -- | 0.874 | -- | -0.134 | 4.63 | -- | -- | -- | -- |
| 221.52 | 0.697 | 2.9 | 0.119 | 0.222 | -- | -- | -- | -0.139 | 3.46 | -- | -- | -- | -- |
| 186.84 | 0.637 | 2.89 | 0.21 | -- | 5.41 | -- | -- | -0.0952 | -- | 8.054 | 102 | 1.52 | 8.67 |
| 185.5 | 0.634 | 2.9 | -- | 0.206 | 5.33 | -- | -- | -0.123 | 2.43 | 8.075 | 90 | 1.47 | 8.84 |
| 224.27 | 0.7 | 2.9 | 0.129 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 221.9 | 0.697 | 2.9 | -- | 0.224 | -- | -- | -- | -0.152 | 3.46 | -- | -- | -- | -- |
| 188 | 0.639 | 2.89 | -- | -- | 5.34 | -- | -- | -0.119 | -- | 8.063 | 102 | 1.54 | 8.64 |
| 224.71 | 0.7 | 2.9 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.52 | wind | 7.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 182.87 | wind | 7.0 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 4 | 183.93 | wind | 7.0 | 90 | > th | dose dependent | rect. | 2 | 8 |
| 6 | 185.15 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 9 |
| 9 | 186.13 | wind | 7.0 | 90 | > th | dose independent | rect. | 2 | 8 |
| 12 | 187.00 | wind | 7.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 13 | 187.33 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 17 | 187.33 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 41 | 188.50 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 2 |
| 49 | 189.28 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 62 | 190.88 | wind | 9.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 92 | 193.78 | wind | 3.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 113 | 195.70 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 128 | 196.55 | wind | 3.0 | 30 | > th | dose dependent | rect. | 1 | 1 |
| 137 | 196.77 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 192 | 198.41 | wind | 3.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 197 | 198.54 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 1 |
| 219 | 199.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 220 | 199.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 235 | 199.33 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 267 | 200.31 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 305 | 201.54 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 312 | 201.54 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 337 | 201.76 | temperature | 25.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 339 | 201.76 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 442 | 204.53 | wind | 7.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 445 | 204.62 | wind | 5.0 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 453 | 204.73 | wind | 9.0 | 90 | > th | dose independent | rect. | 19 | 15 |
| 567 | 205.74 | wind | 5.0 | 720 | > th | dose dependent | rect. | 2 | 2 |
| 579 | 205.86 | wind | 5.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 584 | 205.91 | wind | 7.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 617 | 206.21 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 9 |
| 713 | 207.40 | wind | 9.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 734 | 207.60 | wind | 7.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 817 | 208.09 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 5 |
| 819 | 208.09 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 838 | 208.24 | wind | 7.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 850 | 208.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 856 | 208.34 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 931 | 208.85 | wind | 5.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 944 | 208.93 | wind | 1.0 | 30 | < th | dose independent | rect. | 13 | 3 |
| 959 | 209.00 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 3 |