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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0805600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclin IaZm (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.071) R2 : 0.368
β1 : -5.54 (0.458) R2dD : 1.6 R2D : -1.38
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.68 (0.269) R2dE : 0.731 R2E : -0.418
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.9 (1.96) R2dD*E : 1.33 R2D*E : -1.32
γ1 : -0.619 (0.144) R2dN8 : 0.0811 R2N8 : -0.288
σ : 0.842
deviance : 327.16
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.1
memory length : 4408
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.54
open length of G : 1.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.79 0.835 4.13 -5.52 0.469 3.53 -0.279 -19.9 -0.699 10 24 4393 7.8 2
394.85 0.925 3.72 -3.17 0.539 2.46 -0.389 -- -0.377 10.2 -5.439 47520 3.78 1.72
315.31 0.827 4.13 -5.48 0.462 3.62 -- -20.2 -0.695 9.8 24.01 4402 7.63 1.98
395.27 0.926 3.72 -3.2 0.552 2.48 -- -- -0.399 9.82 -29.96 47520 3.88 1.45
327.16 0.842 4.12 -5.54 -- 3.68 -- -20.9 -0.619 -- 24.1 4408 7.54 1.98
454.63 1 3.49 -0.528 0.527 -- -0.53 -- 0.618 9.75 -- -- -- --
455.65 1 3.49 -0.549 0.533 -- -- -- 0.616 9.54 -- -- -- --
409.93 0.943 3.9 -3.76 -- 3.29 -- -- -0.838 -- 5.679 41030 1.53 3.95
457.36 1 3.49 -- 0.498 0.603 -- -- 0.656 10.4 -31.27 47520 4.75 1.12
472.42 1.02 3.51 -0.553 -- -- -- -- 0.618 -- -- -- -- --
463.6 1.01 3.48 -- 0.534 -- -- -- 0.678 9.61 -- -- -- --
428.32 0.964 3.56 -- -- 1.09 -- -- 0.437 -- 16.7 5045 3.18 3.35
480.48 1.02 3.5 -- -- -- -- -- 0.679 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.29 temperature 25 4320 > th dose dependent rect. 9 1
2 329.58 temperature 25 4320 > th dose dependent rect. 7 4
5 330.11 temperature 25 4320 > th dose dependent rect. 5 6
22 331.66 temperature 25 4320 < th dose independent rect. 7 3
23 331.70 temperature 25 4320 > th dose independent rect. 7 3
25 332.06 humidity 90 43200 > th dose dependent rect. 22 1
43 332.92 humidity 90 43200 > th dose dependent rect. 20 4
52 333.40 humidity 90 43200 > th dose dependent rect. 17 8
64 333.98 humidity 90 43200 > th dose dependent rect. 14 11
67 334.11 humidity 90 43200 > th dose dependent rect. 13 13
77 334.48 humidity 90 43200 > th dose dependent sin 16 NA
83 334.65 humidity 90 43200 > th dose dependent rect. 11 16
87 334.82 temperature 25 4320 > th dose dependent sin 6 NA
132 336.61 humidity 90 43200 > th dose independent rect. 21 2
143 336.85 humidity 90 43200 > th dose independent rect. 8 21
147 336.91 humidity 90 43200 > th dose independent rect. 9 19
178 337.23 humidity 90 43200 > th dose dependent rect. 20 23
183 337.33 humidity 90 43200 > th dose independent sin 17 NA
188 337.39 humidity 90 43200 > th dose dependent no NA NA
194 337.45 humidity 90 43200 > th dose dependent rect. 17 23
206 337.59 humidity 90 43200 > th dose dependent rect. 2 23
224 337.72 humidity 90 43200 > th dose independent rect. 18 6
264 338.19 humidity 90 43200 < th dose independent rect. 9 19
285 338.41 humidity 90 43200 > th dose independent rect. 13 12
290 338.44 humidity 90 43200 > th dose independent rect. 12 14
296 338.51 temperature 20 43200 > th dose dependent rect. 6 1
300 338.54 humidity 90 43200 > th dose independent rect. 12 23
331 338.77 humidity 90 43200 > th dose independent rect. 20 23
332 338.77 temperature 25 43200 > th dose dependent rect. 11 2
336 338.79 humidity 90 43200 > th dose independent rect. 17 23
356 338.87 humidity 90 43200 > th dose independent no NA NA
389 339.03 humidity 90 43200 > th dose independent rect. 1 23
399 339.09 temperature 25 43200 > th dose independent rect. 7 3
400 339.10 temperature 25 43200 < th dose independent rect. 8 1
405 339.12 temperature 25 43200 < th dose independent rect. 7 3
450 339.29 temperature 25 43200 > th dose independent rect. 6 5
477 339.39 temperature 25 43200 > th dose independent rect. 8 1
478 339.39 temperature 25 43200 < th dose independent rect. 6 5
480 339.41 humidity 90 43200 < th dose independent sin 16 NA
481 339.41 humidity 90 43200 > th dose independent rect. 23 23
506 339.50 temperature 20 43200 > th dose dependent rect. 24 1
608 339.75 temperature 25 43200 > th dose dependent sin 0 NA
864 340.47 humidity 90 43200 < th dose independent rect. 14 11
946 340.68 temperature 25 43200 > th dose independent rect. 23 14
958 340.70 humidity 90 43200 < th dose independent rect. 16 9
980 340.74 temperature 25 43200 > th dose dependent no NA NA