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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0607000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.034) R2 : 0.156
β1 : -0.745 (0.132) R2dD : 0.0716 R2D : -0.00154
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.2 (0.365) R2dE : 0.0537 R2E : -0.137
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -24.1 (3.17) R2dD*E : 0.293 R2D*E : 0.0345
γ1 : -0.0679 (0.0733) R2dN8 : 0.00223 R2N8 : -0.00719
σ : 0.624
deviance : 179.43
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.927
memory length : 11
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.99
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.62 0.614 3.25 -0.756 0.38 -1.34 0.289 -24.2 -0.0596 9.97 9.992 10 5.99 1.01
197.52 0.655 3.27 -0.377 0.44 -0.285 0.156 -- 0.0132 9.68 9.299 9 6.18 0.947
170.95 0.609 3.25 -0.756 0.38 -1.34 -- -24.1 -0.0596 9.97 9.992 10 5.99 1.01
196.05 0.652 3.27 -0.411 0.507 -0.506 -- -- -0.037 9.19 0.3794 3 7.62 2.33
179.43 0.624 3.26 -0.745 -- -1.2 -- -24.1 -0.0679 -- 9.927 11 5.99 1.1
198.12 0.66 3.28 -0.377 0.423 -- 0.169 -- -0.00719 9.68 -- -- -- --
198.23 0.659 3.28 -0.37 0.421 -- -- -- -0.00668 9.75 -- -- -- --
207.53 0.671 3.28 -0.35 -- 0.603 -- -- 0.00471 -- 6.72 3 5.55 1.36
198.5 0.656 3.27 -- 0.482 -0.525 -- -- -0.00905 9.56 -17.74 19 7.72 2
208.79 0.675 3.29 -0.374 -- -- -- -- -0.00623 -- -- -- -- --
201.83 0.665 3.27 -- 0.422 -- -- -- 0.0345 9.82 -- -- -- --
210.83 0.676 3.28 -- -- 0.714 -- -- 0.00504 -- 6.87 3 5.58 1.37
212.48 0.68 3.28 -- -- -- -- -- 0.0353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.16 radiation 10.0 10 > th dose independent rect. 6 1
27 171.16 radiation 10.0 10 > th dose dependent rect. 6 1
53 176.33 wind 3.0 30 < th dose dependent rect. 6 1
55 177.46 atmosphere 1005.0 30 > th dose dependent rect. 6 1
59 179.30 humidity 80.0 30 > th dose dependent rect. 6 1
63 180.95 temperature 30.0 30 < th dose dependent rect. 6 1
67 181.52 wind 9.0 30 < th dose independent rect. 7 23
68 181.54 wind 3.0 30 < th dose independent rect. 6 1
74 182.59 temperature 20.0 30 > th dose independent rect. 6 1
78 182.85 wind 9.0 1440 < th dose independent rect. 7 1
79 182.85 temperature 10.0 1440 > th dose independent rect. 7 1
83 182.85 temperature 30.0 1440 < th dose independent rect. 7 1
87 182.85 humidity 50.0 1440 > th dose independent rect. 7 1
92 182.85 atmosphere 995.0 1440 > th dose independent rect. 7 1
93 182.85 atmosphere 1015.0 1440 < th dose independent rect. 7 1
94 182.85 temperature 10.0 1440 > th dose independent rect. 8 23
98 182.99 humidity 80.0 30 > th dose independent rect. 6 1
103 183.06 temperature 10.0 30 > th dose independent rect. 6 1
105 183.06 temperature 30.0 30 < th dose independent rect. 6 1
106 183.06 humidity 50.0 30 > th dose independent rect. 6 1
109 183.06 atmosphere 995.0 30 > th dose independent rect. 6 1
110 183.06 atmosphere 1015.0 30 < th dose independent rect. 6 1
111 183.06 radiation 20.0 30 < th dose independent rect. 6 1
114 183.06 precipitation 0.1 30 < th dose independent rect. 6 1
115 183.06 temperature 10.0 30 > th dose independent rect. 7 23
116 183.06 precipitation 0.1 30 < th dose dependent rect. 6 1
118 183.14 atmosphere 1005.0 30 > th dose independent rect. 6 1
119 183.17 humidity 90.0 30 < th dose independent rect. 6 1
120 183.18 temperature 30.0 90 < th dose dependent rect. 10 1
122 183.41 wind 1.0 30 > th dose independent rect. 6 1
125 183.85 temperature 10.0 30 > th dose dependent rect. 6 1
127 184.17 radiation 40.0 30 < th dose dependent rect. 6 1
166 185.03 atmosphere 1010.0 10 < th dose independent rect. 12 23
179 185.76 temperature 30.0 30 < th dose dependent rect. 10 21
181 185.78 temperature 30.0 90 < th dose dependent rect. 10 7
184 185.90 atmosphere 1000.0 30 > th dose dependent rect. 10 21
189 186.21 temperature 30.0 270 < th dose dependent rect. 8 4
193 186.32 temperature 15.0 4320 > th dose independent rect. 10 3
195 186.36 atmosphere 995.0 10 > th dose dependent rect. 11 1
200 186.54 atmosphere 1010.0 10 < th dose independent sin 4 NA
203 186.60 humidity 60.0 90 > th dose dependent rect. 10 1
207 186.71 humidity 80.0 4320 < th dose independent rect. 19 5
211 186.76 atmosphere 1005.0 720 > th dose dependent rect. 5 1
218 186.83 temperature 30.0 90 < th dose dependent rect. 10 9
219 186.86 humidity 80.0 4320 < th dose independent rect. 19 2
223 186.90 humidity 80.0 4320 > th dose independent rect. 19 5
225 186.93 atmosphere 1005.0 30 > th dose independent rect. 11 1
228 186.96 temperature 10.0 10 > th dose dependent rect. 12 23
232 187.01 temperature 20.0 90 < th dose dependent rect. 12 4
234 187.05 temperature 20.0 10 < th dose dependent rect. 12 5
237 187.08 humidity 90.0 4320 < th dose dependent rect. 21 1
247 187.18 temperature 10.0 90 > th dose dependent rect. 12 23
248 187.19 atmosphere 1015.0 30 < th dose dependent rect. 6 1
253 187.24 atmosphere 1005.0 720 > th dose dependent rect. 24 7
275 187.49 temperature 30.0 270 < th dose dependent rect. 8 7
279 187.52 atmosphere 1005.0 720 > th dose dependent rect. 19 17
280 187.52 temperature 30.0 270 < th dose dependent rect. 8 20
284 187.56 atmosphere 1005.0 720 > th dose dependent sin 9 NA
300 187.65 humidity 50.0 4320 > th dose dependent rect. 21 1
308 187.68 temperature 30.0 90 < th dose independent rect. 10 2
334 187.80 atmosphere 995.0 720 > th dose dependent rect. 24 7
338 187.81 temperature 20.0 10 < th dose dependent rect. 10 7
345 187.83 atmosphere 1015.0 4320 < th dose independent rect. 24 20
350 187.85 atmosphere 1015.0 4320 > th dose independent rect. 24 20
356 187.86 temperature 30.0 90 < th dose dependent rect. 10 17
366 187.89 radiation 40.0 90 < th dose independent rect. 10 2
404 187.97 atmosphere 1005.0 30 > th dose dependent rect. 5 14
406 187.97 temperature 30.0 90 < th dose dependent rect. 10 15
408 187.98 humidity 80.0 4320 > th dose independent rect. 17 16
421 187.99 atmosphere 1005.0 30 > th dose dependent rect. 2 17
460 188.06 atmosphere 1015.0 4320 > th dose independent rect. 16 22
461 188.06 atmosphere 1015.0 4320 > th dose dependent rect. 24 14
462 188.06 atmosphere 995.0 720 > th dose dependent rect. 19 17
473 188.07 atmosphere 1015.0 10 < th dose dependent rect. 12 23
476 188.08 atmosphere 1015.0 4320 < th dose independent rect. 16 21
493 188.10 atmosphere 1015.0 4320 > th dose dependent sin 6 NA
496 188.11 atmosphere 1015.0 4320 < th dose independent rect. 24 14
505 188.12 atmosphere 1015.0 4320 > th dose independent rect. 24 14
529 188.16 temperature 20.0 90 < th dose independent rect. 12 4
535 188.17 humidity 80.0 4320 > th dose independent rect. 19 14
554 188.19 humidity 80.0 4320 < th dose independent rect. 17 16
579 188.21 atmosphere 1015.0 4320 < th dose independent sin 2 NA
592 188.21 atmosphere 1005.0 270 > th dose dependent rect. 23 20
594 188.22 atmosphere 1015.0 4320 > th dose independent sin 2 NA
610 188.22 atmosphere 1015.0 90 < th dose dependent rect. 12 23
611 188.23 atmosphere 1015.0 4320 < th dose independent rect. 24 9
624 188.23 atmosphere 1015.0 4320 > th dose dependent rect. 24 18
634 188.25 temperature 25.0 270 < th dose independent rect. 8 1
668 188.27 atmosphere 1005.0 30 > th dose dependent rect. 5 12
684 188.29 atmosphere 1015.0 4320 < th dose independent no NA NA
686 188.29 atmosphere 1015.0 4320 > th dose independent rect. 24 9
693 188.29 atmosphere 1015.0 4320 < th dose independent rect. 3 23
696 188.29 temperature 30.0 10 < th dose dependent rect. 11 13
699 188.30 atmosphere 1015.0 4320 > th dose independent no NA NA
706 188.30 atmosphere 1015.0 4320 > th dose independent rect. 3 23
726 188.31 atmosphere 1015.0 4320 < th dose independent rect. 19 23
746 188.32 atmosphere 1015.0 4320 > th dose independent rect. 19 23
748 188.32 atmosphere 1015.0 4320 < th dose independent rect. 11 23
760 188.33 atmosphere 1015.0 4320 > th dose independent rect. 11 23
799 188.36 atmosphere 1015.0 4320 < th dose independent rect. 3 2
831 188.37 atmosphere 1005.0 270 > th dose dependent rect. 23 18
845 188.38 atmosphere 1015.0 4320 < th dose independent rect. 9 23
855 188.39 atmosphere 1010.0 10 < th dose independent rect. 24 10
881 188.40 wind 7.0 10 < th dose independent rect. 12 23
882 188.40 atmosphere 1015.0 4320 > th dose independent rect. 9 23
953 188.45 atmosphere 1015.0 720 < th dose dependent rect. 21 12
954 188.45 atmosphere 1005.0 30 > th dose dependent rect. 2 15
971 188.46 atmosphere 1005.0 270 > th dose dependent rect. 2 15
995 188.48 humidity 90.0 30 < th dose dependent rect. 6 1