BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0574900 Os02g0574900|AK073087
(460 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0574900 Cyclin-like F-box domain containing protein 877 0.0
Os10g0363600 Cyclin-like F-box domain containing protein 476 e-134
Os03g0167800 Cyclin-like F-box domain containing protein 106 3e-23
Os07g0153400 Cyclin-like F-box domain containing protein 102 5e-22
Os10g0409900 Cyclin-like F-box domain containing protein 100 2e-21
Os03g0171600 Cyclin-like F-box domain containing protein 77 3e-14
Os04g0619300 Cyclin-like F-box domain containing protein 65 9e-11
>Os02g0574900 Cyclin-like F-box domain containing protein
Length = 460
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/460 (93%), Positives = 430/460 (93%)
Query: 1 MGSVVSSANINARSMDRHEKSGFGSNKRVKISTYECDSFQRIIPTLPDELSFQIXXXXXX 60
MGSVVSSANINARSMDRHEKSGFGSNKRVKISTYECDSFQRIIPTLPDELSFQI
Sbjct: 1 MGSVVSSANINARSMDRHEKSGFGSNKRVKISTYECDSFQRIIPTLPDELSFQILARLPR 60
Query: 61 XXXXXXXXVSQAWKAAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFRKWQ 120
VSQAWKAAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFRKWQ
Sbjct: 61 LYYLKLKLVSQAWKAAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFRKWQ 120
Query: 121 RLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGCSVG 180
RLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGCSVG
Sbjct: 121 RLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGCSVG 180
Query: 181 VADGCLYVFGGFSRAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVGGVS 240
VADGCLYVFGGFSRAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVGGVS
Sbjct: 181 VADGCLYVFGGFSRAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVGGVS 240
Query: 241 RGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKGKLY 300
RGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKGKLY
Sbjct: 241 RGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKGKLY 300
Query: 301 VPQSLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPS 360
VPQSLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPS
Sbjct: 301 VPQSLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPS 360
Query: 361 SSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNLQVM 420
SSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNLQVM
Sbjct: 361 SSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNLQVM 420
Query: 421 QAVLQXXXXXXXXXXXXXXXXLASKNFGSAELVSCQVLDV 460
QAVLQ LASKNFGSAELVSCQVLDV
Sbjct: 421 QAVLQNNIENSPSEENIIWNILASKNFGSAELVSCQVLDV 460
>Os10g0363600 Cyclin-like F-box domain containing protein
Length = 475
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/477 (49%), Positives = 319/477 (66%), Gaps = 19/477 (3%)
Query: 1 MGSVVSSANINARSMDRHEKSGFGSNKRVKISTYECDS---FQRIIPTLPDELSFQIXXX 57
MG+++SS N + + E S S+K++++S +IP LPDE+S QI
Sbjct: 1 MGALLSSPNSKNQPWEHGEASKADSSKKLRMSAPPLSGGYDHPGLIPGLPDEISLQILAR 60
Query: 58 XXXXXXXXXXXVSQAWKAAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFR 117
VS++WKAAIT EL ++R+ELG++EEWLY+LTK + KL A DP+
Sbjct: 61 MPRMGYLNAKMVSRSWKAAITGVELYRVRKELGVSEEWLYMLTKSDDGKLVWNAFDPVCG 120
Query: 118 KWQRLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGC 177
+WQRLP MP E W +++ + IR++D I+GW +R LD++PFCGC
Sbjct: 121 QWQRLPLMPGISHGGECKRGIPGLWLG--DLLSAGIRVSDVIRGWLGQRDSLDRLPFCGC 178
Query: 178 SVGVADGCLYVFGGFSRAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVG 237
++G +GC+YV GGFSR A+ CV+RY+P +N WQEVS M +GRAF KA+LL +KLYVVG
Sbjct: 179 AIGTVNGCIYVLGGFSRGSAMKCVWRYDPFVNAWQEVSSMSTGRAFCKASLLNNKLYVVG 238
Query: 238 GVSRGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKG 297
GVS+G+NGL PL+S EVFDP+TGIW E+P++PF KAQ LPTAFLA++LKPIATGM S+ G
Sbjct: 239 GVSKGKNGLAPLQSAEVFDPRTGIWVEVPDIPFSKAQALPTAFLAELLKPIATGMTSFGG 298
Query: 298 KLYVPQSLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTL 357
KLYVPQSLYSWPFF D+GGEI+DPE NSW M G+G+GWPARQAGTKL V++ +LY L
Sbjct: 299 KLYVPQSLYSWPFFVDVGGEIFDPETNSWAEMPVGMGEGWPARQAGTKLSAVIDGDLYAL 358
Query: 358 EPSSSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNL 417
EPS+S D G+IK YD ++D WK + QVPV DF ++E P+LLAG GK+++I K+ ++ +
Sbjct: 359 EPSTSSDRGKIKIYDPQEDAWKVAIGQVPVGDFAESECPYLLAGFLGKLNLIIKDVDSKI 418
Query: 418 QVMQA-VLQ-------------XXXXXXXXXXXXXXXXLASKNFGSAELVSCQVLDV 460
+MQ VL+ + SKN +AELVSCQVL++
Sbjct: 419 NIMQTDVLKPVELSAPGNGPTCQNQQLSSEQETNLWKVIVSKNLAAAELVSCQVLNI 475
>Os03g0167800 Cyclin-like F-box domain containing protein
Length = 438
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 156/400 (39%), Gaps = 84/400 (21%)
Query: 26 NKRVKISTYE--CDSFQRIIPTLPDELSFQIXXXXXXXXXXXXXXVSQAWKAAITSSELS 83
NKR S+++ C + ++P LPD+L+ V + W ++ +
Sbjct: 60 NKRKSRSSHKERCRTQAPLLPGLPDDLAITCLMRVPRLEHTNLRLVCKRWNRLLSGNYYY 119
Query: 84 QLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFRKWQRLPPMPSFVSEEESTGRTQSSWF 143
LR++LG+ EEW++V + K+ +A DP+ + W+ LPP+P+ SE
Sbjct: 120 SLRKKLGMAEEWVFVFKRDRDRKISWHAFDPVHQVWKSLPPVPAEYSE------------ 167
Query: 144 QTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGCSVGVADGC-LYVFGGFS--RAVALNC 200
VG GC+ V GC LY+FGG R
Sbjct: 168 ----AVGF------------------------GCA--VLSGCYLYLFGGKDPVRGSMRRV 197
Query: 201 VFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVGGVSRGRNGLLPLRSGEVFDPKTG 260
VF YN +N W M+ R + ++ ++LYV GG G LRS E +DP
Sbjct: 198 VF-YNARINKWLRAPDMLQKRHCFGSCVINNRLYVAGGECEGIQ--RTLRSAEFYDPNRN 254
Query: 261 IWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKGKLYVPQ-SLYSWPFFFDIGGEIY 319
WS + EM +TGM + G +Y + L + E+Y
Sbjct: 255 RWSYISEM--------------------STGMVPFIGVVYDGKWFLKGLDSHRQVVSEVY 294
Query: 320 DPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPSSSLDSGQIKRYDSEQDTWK 379
P N W AD + GW I N LY+ E D +++ YD + +W
Sbjct: 295 MPTSNVWSVTADEMVTGW------RNPSICFNGRLYSAE---CRDGCKLRVYDRDTRSWT 345
Query: 380 TIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNLQV 419
+ + A L L+GK+ +I NN+ +
Sbjct: 346 RFMDSRRHLGNSRAFEAAALVSLNGKICII----RNNMSI 381
>Os07g0153400 Cyclin-like F-box domain containing protein
Length = 406
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 176 GCSVGVADGCLYVFGGF--SRAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKL 233
GC +DG L V GG L+ V +Y+ N W ++ M++ R+F ++ ++
Sbjct: 150 GCVAIPSDGTLLVCGGLVSDMDCPLHLVLKYDVYKNRWTVMTRMLAARSFFAGGVIDGRV 209
Query: 234 YVVGGVSRGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMA 293
YV GG S + L S EV DP G+W + M A ++ A
Sbjct: 210 YVAGGYSTDQ---FELNSAEVLDPVKGVWQPVASMGMNMA---------------SSDSA 251
Query: 294 SYKGKLYVPQSLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEE 353
G+LYV + +WPFF G++YDP+++ WE M G+ +GW T L +V+++
Sbjct: 252 VISGRLYVTEGC-AWPFFSSPRGQVYDPKIDRWEVMPVGMREGW------TGLSVVIDKH 304
Query: 354 LYTLEPSSSLDSGQIKRYDSEQDTWKTIV-PQVPVHDFTDAEAPFLLAGLHGKVHVITK 411
L+ + S + ++K YD E D+W ++ P +P PF ++ L K+ V+ +
Sbjct: 305 LFVI---SEYERMKVKVYDPETDSWDSVKGPPMP----ERIMKPFSVSCLENKIVVVGR 356
>Os10g0409900 Cyclin-like F-box domain containing protein
Length = 442
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 140/382 (36%), Gaps = 82/382 (21%)
Query: 42 IIPTLPDELSFQIXXXXXXXXXXXXXXVSQAWKAAITSSELSQLRRELGLTEEWLYVLTK 101
++P LPD+L+ V + W ++ + LR+ G+ EEW+YV +
Sbjct: 82 LLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKR 141
Query: 102 LEPNKLDCYALDPLFRKWQRLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKG 161
K+ +A DPL + W+ LPP+P+ SE G
Sbjct: 142 DREGKISWHAFDPLHQLWKSLPPVPAEYSEALGFG------------------------- 176
Query: 162 WFRRRYGLDQMPFCGCSVGVADGC-LYVFGGFS--RAVALNCVFRYNPCLNVWQEVSPMI 218
V GC LY+FGG R VF YN N W M+
Sbjct: 177 -----------------CAVLSGCYLYLFGGKDPLRGSMRRVVF-YNARTNKWHRAPDML 218
Query: 219 SGRAFSKAALLQSKLYVVGGVSRGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPT 278
R F + ++ + LYV GG G LP S EV+DP W+ + EM
Sbjct: 219 RKRHFFGSCVINNCLYVAGGECEGIQRTLP--SAEVYDPNRNRWACVAEM---------- 266
Query: 279 AFLADVLKPIATGMASYKGKLYVPQ-SLYSWPFFFDIGGEIYDPELNSWETMADGLGDGW 337
GM + G +Y + L + E+Y P N W T+ D + GW
Sbjct: 267 ----------NNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGW 316
Query: 338 PARQAGTKLGIVVNEELYTLEPSSSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPF 397
I N +LY+ S D +++ YD TW + + A
Sbjct: 317 ------RNPSITFNGKLYS---SDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAA 367
Query: 398 LLAGLHGKVHVITKEANNNLQV 419
L L+GK+ ++ NN+ +
Sbjct: 368 ALVTLNGKLCIV----RNNMSI 385
>Os03g0171600 Cyclin-like F-box domain containing protein
Length = 431
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 138/364 (37%), Gaps = 81/364 (22%)
Query: 22 GFGSNKRVKIST--YECDSFQRIIPTLPDELSFQIXXXXXXXXXXXXXXVSQAWKAAITS 79
G GS++ V S E + +I + +L+ +++ +++ + +
Sbjct: 73 GHGSSRHVAASGGGEEHGNGSSLIGAIGRDLTINCLLRLSRSDYGSVASLNKDFRSLVRN 132
Query: 80 SELSQLRRELGLTEEWLYVLTKLEPNKLDCYALDPLFRKWQRLPPMPSFVSEEESTGRTQ 139
E+ +LRR+ G+ E W+Y N L+ A DP +W ++P MP
Sbjct: 133 GEIYRLRRQSGVAEHWVY----FSCNVLEWDAYDPYRERWIQVPKMPP------------ 176
Query: 140 SSWFQTWNVVGSSIRIADFIKGWFRRRYGLDQMPFCGCSVGVADGC-LYVFGGFSRAVAL 198
D+ C +A G L VF
Sbjct: 177 ------------------------------DECFMCSDKESLAVGTELLVF------AMA 200
Query: 199 NCVFRYNPCLNVWQEVSPMISGRAFSKAALLQSKLYVVGGV-SRGRNGLLPLRSGEVFDP 257
+ VFRY+ N W PMIS R + + +K YV GG S GR L S E++D
Sbjct: 201 HIVFRYSILTNSWTRADPMISPRCLFGSTSVGAKAYVAGGTDSSGR----ILSSAEMYDS 256
Query: 258 KTGIWSELPEMPFMKAQVLPTAFLADVLKPIATGMASYKGKLYVPQSLYSWPFFFDIGGE 317
+T W+ LP M +A+ + + D + G+AS L GE
Sbjct: 257 ETHSWTPLPSM--NRARKMCSGVFMDGKFYVVGGVASNNKVLTC--------------GE 300
Query: 318 IYDPELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPSSSLDSGQIKRYDSEQDT 377
YD + SW + + + +G L VVN ELY + S +K+YD + +
Sbjct: 301 EYDLKRRSWRVI-ENMSEGLNGVTGAPPLIAVVNNELYAADYSEK----DVKKYDKQNNK 355
Query: 378 WKTI 381
W T+
Sbjct: 356 WITL 359
>Os04g0619300 Cyclin-like F-box domain containing protein
Length = 455
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 17/234 (7%)
Query: 42 IIPTLPDELSFQIXXXXXXXXXXXXXXVSQAWKAAITSSELSQLRRELGLTEEWLYVLTK 101
P L D+L+ +++ + I S L +LRR+ G+ E W+Y+
Sbjct: 113 FFPGLHDDLAQDCLAWASRSDYPSLSCLNKKFNLLINSGYLYRLRRKYGIVEHWVYLACS 172
Query: 102 LEPNKLDCYALDPLFRKWQRLPPMP-----SFVSEEESTGRTQSSWFQTWNVVGSSIRIA 156
L P + A DP ++W RLP MP S +E TQ F G +I +
Sbjct: 173 LMPWE----AFDPSRKRWMRLPRMPCDECFSCADKESLAVGTQLLVFGR-EYTGLAIWMY 227
Query: 157 DFI-KGWFRRRYGLDQMPFCGCSVGVADGCLYVFGGFSR-AVALNCVFRYNPCLNVWQEV 214
+ + +GW R +P C + G V GG + L YN W+ +
Sbjct: 228 NLLARGW--SRCTPMNLPRCLFASGSFGEIAIVAGGCDKNGQVLKSAELYNSETGHWETL 285
Query: 215 SPMISGRAFSKAALLQSKLYVVGGVSRGRNGLLPLRSGEVFDPKTGIWSELPEM 268
M R S + K YV+GGVS R+ L GE ++ +T W + +M
Sbjct: 286 PDMNLPRRLSSGFFMDGKFYVIGGVSSQRDSLT---CGEEYNLETRTWRRIHDM 336
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,149,439
Number of extensions: 630677
Number of successful extensions: 1352
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 8
Length of query: 460
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 356
Effective length of database: 11,605,545
Effective search space: 4131574020
Effective search space used: 4131574020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)