BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0567900 Os02g0567900|AK060161
(257 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0567900 Similar to RNA Binding Protein 47 421 e-118
Os04g0449900 Similar to RNA Binding Protein 47 383 e-107
Os09g0462700 Similar to RNA Binding Protein 47 313 6e-86
Os03g0569900 Similar to RNA Binding Protein 45 248 3e-66
Os03g0174100 Similar to RNA Binding Protein 45 241 3e-64
Os04g0625800 Similar to RNA Binding Protein 45 231 5e-61
Os07g0615400 Similar to Oligouridylate binding protein 113 1e-25
Os07g0516900 Similar to RNA Binding Protein 45 101 5e-22
Os08g0520300 Similar to Oligouridylate binding protein 99 4e-21
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 70 1e-12
Os09g0115400 Similar to Poly(A)-binding protein 70 2e-12
Os02g0622500 RNA-binding region RNP-1 (RNA recognition moti... 70 2e-12
Os04g0504800 Similar to Poly(A)-binding protein 68 7e-12
Os08g0567200 RNA-binding region RNP-1 (RNA recognition moti... 67 9e-12
Os08g0314800 Similar to Poly(A)-binding protein 64 9e-11
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/257 (82%), Positives = 211/257 (82%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV
Sbjct: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXX 120
IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPAT
Sbjct: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSPPR 120
Query: 121 XXXXXXTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEEA 180
TNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEEA
Sbjct: 121 QSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEEA 180
Query: 181 LQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNXXXXXXXXXXXXXXASPLPHPNMX 240
LQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRN ASPLPHPNM
Sbjct: 181 LQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNGMYYGTPFYGGYGYASPLPHPNMY 240
Query: 241 XXXXXXXXXXXNQQLVS 257
NQQLVS
Sbjct: 241 AAAYGAYPYYGNQQLVS 257
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 202/257 (78%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MPNTDR FKLNWASYSMGEKR+E+ASD+SIFVGDLA DVTDEMLM+LFA KYRSVKGAKV
Sbjct: 131 MPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKV 190
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXX 120
IIDANTGRSRGYGFVRFGDDNDK+HAMTEMNGAYCSTRPIRIGPAT
Sbjct: 191 IIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSTPG 250
Query: 121 XXXXXXTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEEA 180
TNRT+YVGGLDPN +EDELRKAFAKYGD+ASVKIP+GKQCGFVQFV+R DAEEA
Sbjct: 251 HSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCGFVQFVSRTDAEEA 310
Query: 181 LQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNXXXXXXXXXXXXXXASPLPHPNMX 240
LQGLNGS IGKQAVRLSWGRSP+ KQSR DSG RRN ASP+PHPNM
Sbjct: 311 LQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGYGYASPVPHPNMY 370
Query: 241 XXXXXXXXXXXNQQLVS 257
+QQLVS
Sbjct: 371 AAAYGAYPVYGSQQLVS 387
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 313 bits (803), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/261 (59%), Positives = 187/261 (71%), Gaps = 4/261 (1%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MPNTD+ F++NWAS+SMG++R+++ASDHSIFVGDLA DV D L++ F+K+Y SVKGAKV
Sbjct: 181 MPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKV 240
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPAT-XXXXXXXXXXXXX 119
+IDANTGRS+GYGFVRFGDDN+KTHAMTEMNG YCSTRP+RIGPAT
Sbjct: 241 VIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSA 300
Query: 120 XXXXXXXTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEE 179
TN T++VGGLDPN +ED+LR+ F++YG+++SVKIPVGKQCGFVQFV R +AE+
Sbjct: 301 ARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGFVQFVQRKNAED 360
Query: 180 ALQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNXXXXXXXXXXXXXXASPLPH--- 236
ALQGLNGSTIGKQ VRLSWGR+PA+KQ R D+G + N P P
Sbjct: 361 ALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMYYAASPFYSGYGYPAPFPAD 420
Query: 237 PNMXXXXXXXXXXXXNQQLVS 257
P M NQQ VS
Sbjct: 421 PGMYAAAYGAYPFYGNQQQVS 441
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 155/217 (71%), Gaps = 7/217 (3%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MPN ++ FKLNWA+ GEKR + SD++IFVGDLA DVTD +L D F Y+SVKGAKV
Sbjct: 133 MPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKV 192
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXX 120
+ D +TGRS+GYGFV+FGD +++T AMTEMNG YCS+RP+RIGPA+
Sbjct: 193 VFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSAT 252
Query: 121 XXXXXXT-------NRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVN 173
T N T++VGGLDP+ T++ L++AF+ YG+L VKIPVGK+CGFVQ+ N
Sbjct: 253 YQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRCGFVQYSN 312
Query: 174 RPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQSRGD 210
R AEEA++ LNGS +G Q++RLSWGRSP +KQ + D
Sbjct: 313 RASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQQD 349
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 241 bits (615), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 145/225 (64%), Gaps = 17/225 (7%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MP T+ F+LNWAS+S GE+R + DHSIFVGDLA DVTD +L + F Y SVKGAKV
Sbjct: 82 MPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKV 141
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXX 120
+ D NTGRS+GYGFV+F D+N+K AMTEMNG YCSTRP+RI A
Sbjct: 142 VTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGSQLQYGAA 201
Query: 121 XXXXXX-----------------TNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVG 163
TN TI++G LD N TEDELR+ ++G+L VKIP
Sbjct: 202 KAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFGELIYVKIPAN 261
Query: 164 KQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQSR 208
K CGFVQ+ +R AEEA+Q L+G+TIG+Q VRLSWGRSPASKQ +
Sbjct: 262 KACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSWGRSPASKQDQ 306
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/214 (55%), Positives = 144/214 (67%), Gaps = 6/214 (2%)
Query: 1 MPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKV 60
MPN + F+LNWAS GEKR + D++IFVGDLA DVTD +L + F Y SVKGAKV
Sbjct: 156 MPNVEMVFRLNWAS--AGEKRDD-TPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKV 212
Query: 61 IIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXX 120
+ D T RS+GYGFV+FGD ++ AMTEMNG CS+RP+RIGPA
Sbjct: 213 VTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNA 272
Query: 121 XXXXXXT---NRTIYVGGLDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDA 177
N TI+VGGLDPN TED L++ FA YG++ VKIPVGK+CGFVQ+VNRP A
Sbjct: 273 QGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIPVGKRCGFVQYVNRPSA 332
Query: 178 EEALQGLNGSTIGKQAVRLSWGRSPASKQSRGDS 211
E+AL L G+ IG Q VRLSWGRS ++KQ + DS
Sbjct: 333 EQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS 366
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 27/220 (12%)
Query: 6 RAFKLNWASYSMGEKRAELASDH-SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDA 64
+ ++NWA Y+ G++ E +DH +IFVGDL+ +VTD L F+ Y S A+V+ D
Sbjct: 130 QLIRVNWA-YASGQR--EDTTDHFNIFVGDLSPEVTDSALFAFFSG-YSSCSDARVMWDQ 185
Query: 65 NTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXX 124
TGRSRGYGFV F + D A+ ++NG + +R IR AT
Sbjct: 186 KTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVAD 245
Query: 125 XXTN--------------------RTIYVGGLDPNATEDELRKAFAKY--GDLASVKIPV 162
N RT+YVG L T+D L + F G + V+I +
Sbjct: 246 LTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGAGAIEEVRIQL 305
Query: 163 GKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSP 202
GK GFV++ N +A A+Q NG +G + ++ SWG P
Sbjct: 306 GKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGNKP 345
>Os07g0516900 Similar to RNA Binding Protein 45
Length = 92
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 56/71 (78%)
Query: 35 LAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAY 94
LA DVTD ML + F Y SV+GAKV+ D TGRS+GYGFVRFGD+N++T AMTEMNGA
Sbjct: 1 LASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGAT 60
Query: 95 CSTRPIRIGPA 105
STR +R+GPA
Sbjct: 61 LSTRQMRLGPA 71
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 97/223 (43%), Gaps = 29/223 (13%)
Query: 6 RAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDAN 65
+A K+NWA S +R + + IFVGDL+ +V D L F+ Y S A+V+ D
Sbjct: 138 QAIKVNWAYAST--QREDTSGHFHIFVGDLSSEVNDATLYACFSA-YPSCSDARVMWDNK 194
Query: 66 TGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXX 125
TGRSRGYGFV F + + A+TEM G + +R IR AT
Sbjct: 195 TGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNAEEKQETDNHNAVVLT 254
Query: 126 XTNR------------------------TIYVGGLDPNATEDELRKAFAKY--GDLASVK 159
+ T+YVG L DEL + F G + V+
Sbjct: 255 NGSSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVR 314
Query: 160 IPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSP 202
+ K GFV++ N +A A+Q NG + + ++ SWG P
Sbjct: 315 VQQDKGFGFVRYSNHGEAALAIQMANGLVVRGKPIKCSWGNKP 357
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 6 RAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDAN 65
R ++N+A + ++H +FVG+L+ VT EML ++F +K +V GA+V+ D
Sbjct: 214 RTMRVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMF-QKCGNVVGARVLYDGE 272
Query: 66 TGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPA 105
TGRSRGYGFV + + A++ +NG R IR+ A
Sbjct: 273 TGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 28 HSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAM 87
++++V +L+ + T++ L ++F K + ++ A V++ GRS+ +GFV F +D A+
Sbjct: 219 NNVYVKNLSENTTEDDLKEIFGK-FGTITSA-VVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 88 TEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXXXT----NRTIYVGGLDPNATED 143
E+NG + +G A N +Y+ LD + +D
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 144 ELRKAFAKYGDLASVKIP-----VGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSW 198
+LR+ FA+YG + S K+ V + GFV F + DA AL +N +G + + ++
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 199 GRSPASKQSR 208
+ +++R
Sbjct: 397 AQRKEDRKAR 406
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 29 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 88
+IF+ +L + ++ L D F + ++ KV DA +G S+GYGFV++ D A+
Sbjct: 129 NIFIKNLDKSIDNKALYDTFCV-FGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAID 186
Query: 89 EMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXXXTNRTIYVGGLDPNATEDELRKA 148
++NG + + + +GP +YV L N TED+L++
Sbjct: 187 KLNGMLMNDKKVYVGPFIRKQERDNSPGQVKF--------NNVYVKNLSENTTEDDLKEI 238
Query: 149 FAKYGDLASVKIP-----VGKQCGFVQFVNRPDAEEALQGLNG 186
F K+G + S + K GFV F + DA +A+Q LNG
Sbjct: 239 FGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNG 281
>Os02g0622500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 137
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 27 DHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHA 86
D +F GDL +V D++L F+K Y S A+VI D TG++RGY FV F + +D A
Sbjct: 28 DFRLFCGDLGNEVNDDVLTKAFSK-YPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
Query: 87 MTEMNGAYCSTRPIRIGPAT 106
+ EMNG Y RPI++ +T
Sbjct: 87 LKEMNGKYVGNRPIKLRKST 106
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 28 HSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAM 87
+++FV +L+ T E L+ +F Y ++ A +++ + G+SR +GF+ F +D A+
Sbjct: 218 NNVFVKNLSESTTKEDLVKIFGA-YGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAV 275
Query: 88 TEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXXXTNR----TIYVGGLDPNATED 143
E+NG + + +G A ++ +Y+ LD + +D
Sbjct: 276 EELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDD 335
Query: 144 ELRKAFAKYGDLASVKIP-----VGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSW 198
+L + F+ YG + S KI V K GFV F R +A +AL +NG I + + +++
Sbjct: 336 QLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAF 395
Query: 199 GR 200
+
Sbjct: 396 AQ 397
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 28 HSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAM 87
S++VGDL VTD L +LF++ + V +V D ++ RS GY +V F + D A+
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQ-VMSVRVCRDISSRRSLGYAYVNFNNPVDAARAL 97
Query: 88 TEMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXXXTNRTIYVGGLDPNATEDELRK 147
+N A + +PIR+ + I++ LD L
Sbjct: 98 ELLNFAPLNGKPIRV------------MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHD 145
Query: 148 AFAKYGDLASVKIPV-----GKQCGFVQFVNRPDAEEALQGLNGSTIGKQAV 194
F+ +G++ S K+ K GFVQ+ A+ A++ LNG I + V
Sbjct: 146 TFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPV 197
>Os08g0567200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 235
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 26 SDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTH 85
+D+ +F GDL +V D++L F++ + S A+V+ D TG+++GYGFV F + D
Sbjct: 125 NDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
Query: 86 AMTEMNGAYCSTRPIRI 102
A+ EMNG Y RPI++
Sbjct: 184 AIKEMNGKYVGNRPIKL 200
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 29 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 88
+IF+ +L + ++ L D F+ + ++ KV + +G S+GYGFV+F + +A++
Sbjct: 128 NIFIKNLDKSIDNKALYDTFSV-FGNILSCKVATEM-SGESKGYGFVQFELEEAAQNAIS 185
Query: 89 EMNGAYCSTRPIRIGPATXXXXXXXXXXXXXXXXXXXXTNRTIYVGGLDPNATEDELRKA 148
++NG + + + +GP +YV L + TED L++
Sbjct: 186 KLNGMLLNDKKVYVGPFVRKQERENVSGNPKF--------NNVYVKNLSESTTEDNLKEI 237
Query: 149 FAKYGDLASVKIPV---GK-QC-GFVQFVNRPDAEEALQGLNG 186
F K+G + SV + GK +C GFV F N DA A++ LNG
Sbjct: 238 FGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNG 280
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,293,892
Number of extensions: 260657
Number of successful extensions: 1121
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 20
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)