BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0508100 Os02g0508100|AK121771
(72 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0508100 Conserved hypothetical protein 137 2e-33
Os04g0387600 Conserved hypothetical protein 107 1e-24
Os01g0923200 Conserved hypothetical protein 101 1e-22
Os11g0496500 Similar to AT.I.24-5 protein (Fragment) 100 4e-22
Os02g0508801 94 1e-20
Os07g0298400 Conserved hypothetical protein 92 6e-20
Os05g0103400 Conserved hypothetical protein 92 1e-19
Os05g0103300 Similar to AT.I.24-5 protein (Fragment) 87 3e-18
Os01g0101900 83 4e-17
>Os02g0508100 Conserved hypothetical protein
Length = 72
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 GEAMADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITI 60
GEAMADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITI
Sbjct: 1 GEAMADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITI 60
Query: 61 FLIAIGVHIYAG 72
FLIAIGVHIYAG
Sbjct: 61 FLIAIGVHIYAG 72
>Os04g0387600 Conserved hypothetical protein
Length = 69
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
MADWGPVV+ATVLFVLLTPGLL +P GR+ FG+ HTSG+A++VHAV+YFAL+TIFLI
Sbjct: 1 MADWGPVVVATVLFVLLTPGLLCTVPGRGRVAEFGSFHTSGLAIIVHAVLYFALLTIFLI 60
Query: 64 AIGVHIYAG 72
AIGVHIYAG
Sbjct: 61 AIGVHIYAG 69
>Os01g0923200 Conserved hypothetical protein
Length = 75
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 59/70 (84%)
Query: 3 AMADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFL 62
A DWGP+++A +LFV+L+PGLLFQLPA R+V FG M TS +A+LVHAVI+F L+TIF+
Sbjct: 6 ASTDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFV 65
Query: 63 IAIGVHIYAG 72
+AIGVH+YA
Sbjct: 66 VAIGVHVYAA 75
>Os11g0496500 Similar to AT.I.24-5 protein (Fragment)
Length = 69
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 57/69 (82%)
Query: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
MADWGPV I VLF+LL+PGLLFQ+P GRIV FG TSG+++LVH++IYFALI IFL+
Sbjct: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSIIYFALIAIFLL 60
Query: 64 AIGVHIYAG 72
A+ VH+Y G
Sbjct: 61 AVNVHMYLG 69
>Os02g0508801
Length = 70
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 56/67 (83%)
Query: 6 DWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLIAI 65
DWGPVV+A +LF+LL+PGLLFQ+PA R+V FG M TSGV+VLVHAV +F L T+ ++AI
Sbjct: 4 DWGPVVVAVILFILLSPGLLFQVPARTRVVEFGNMCTSGVSVLVHAVFFFVLFTVLVVAI 63
Query: 66 GVHIYAG 72
G+H+ AG
Sbjct: 64 GIHVRAG 70
>Os07g0298400 Conserved hypothetical protein
Length = 78
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 56/69 (81%)
Query: 3 AMADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFL 62
A DWGP++ A VLF+LL+PG LFQLPA R+V G M TSG+++LVHA++YF ++TI +
Sbjct: 3 ATTDWGPIIAAVVLFILLSPGFLFQLPARARVVELGNMGTSGLSILVHAILYFCILTIVV 62
Query: 63 IAIGVHIYA 71
+AIGVH+Y+
Sbjct: 63 VAIGVHVYS 71
>Os05g0103400 Conserved hypothetical protein
Length = 69
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
M+DWGPVVIA VLFVLL+PGLL QLP V FG +HTS ++++VH++IYFALIT+F+I
Sbjct: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
Query: 64 AIGVHI 69
IGVHI
Sbjct: 61 VIGVHI 66
>Os05g0103300 Similar to AT.I.24-5 protein (Fragment)
Length = 72
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%)
Query: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
M DWGPV+I+ VLF+LL+PGLLFQ+P R++ FG TS V++LVH +++FAL IFL+
Sbjct: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
Query: 64 AIGVHIYAG 72
AIGV I G
Sbjct: 61 AIGVQINLG 69
>Os01g0101900
Length = 72
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 6 DWGPVVIATVLFVLLTPGLLFQLP-AHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLIA 64
DWGPV+IA VLFVLLTPGLL Q+P ++GR+ F +M TS ++ VHA+++FA IF++A
Sbjct: 5 DWGPVLIALVLFVLLTPGLLCQIPGSNGRVAEFHSMRTSVASIFVHALLFFAFCAIFMVA 64
Query: 65 IGVHIYAG 72
+G+H+YAG
Sbjct: 65 VGLHLYAG 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.333 0.149 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,176,852
Number of extensions: 67691
Number of successful extensions: 156
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 12
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 149 (62.0 bits)