BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0205400 Os02g0205400|AK101434
(342 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0205400 WD40-like domain containing protein 712 0.0
Os06g0598900 Similar to Serine-threonine kinase receptor-as... 607 e-174
AK111547 606 e-174
Os08g0308100 Similar to TGF-beta receptor-interacting prote... 144 1e-34
Os05g0256000 Similar to TGF-beta receptor-interacting prote... 141 8e-34
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 74 1e-13
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 74 1e-13
AK111235 72 4e-13
Os01g0780400 WD40-like domain containing protein 67 1e-11
Os10g0494800 Similar to Katanin p80 WD40-containing subunit... 65 6e-11
>Os02g0205400 WD40-like domain containing protein
Length = 342
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MDRKKAGVPLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGH 60
MDRKKAGVPLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGH
Sbjct: 1 MDRKKAGVPLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGH 60
Query: 61 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTG 120
KGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTG 120
Query: 121 GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI 180
GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI
Sbjct: 121 GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI 180
Query: 181 AQTLETKATVTSAEVSQDGRYIITADGSSVKFWDANYFGLVKSYNMPCNVESASLEPKYG 240
AQTLETKATVTSAEVSQDGRYIITADGSSVKFWDANYFGLVKSYNMPCNVESASLEPKYG
Sbjct: 181 AQTLETKATVTSAEVSQDGRYIITADGSSVKFWDANYFGLVKSYNMPCNVESASLEPKYG 240
Query: 241 NKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLG 300
NKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLG
Sbjct: 241 NKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLG 300
Query: 301 PATSDEQESPPNANGKLKVNTVSDAARKIEGFHLPKDGQTEG 342
PATSDEQESPPNANGKLKVNTVSDAARKIEGFHLPKDGQTEG
Sbjct: 301 PATSDEQESPPNANGKLKVNTVSDAARKIEGFHLPKDGQTEG 342
>Os06g0598900 Similar to Serine-threonine kinase receptor-associated protein
(UNR-interacting protein) (WD-40 repeat protein PT-WD)
(MAP activator with WD repeats)
Length = 342
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/341 (84%), Positives = 316/341 (92%), Gaps = 2/341 (0%)
Query: 1 MDRKKAGVPLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGH 60
M++KK VPLVCHGHSRPVVDLFYSPVTPDG FLISASKD NPM+RNG+TGDWIGTF+GH
Sbjct: 1 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGYFLISASKDGNPMLRNGETGDWIGTFQGH 60
Query: 61 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTG 120
KGAVWSCCLDTNALRAASGSADFSAKVWDALTG+ELHSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 120
Query: 121 GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI 180
G+EKILR+YDMNRPDAAPRE+DK+PG+VRTVAWLHSDQ+ILS C+DMGGVRLWDVR+GKI
Sbjct: 121 GVEKILRVYDMNRPDAAPRELDKAPGNVRTVAWLHSDQTILSSCSDMGGVRLWDVRTGKI 180
Query: 181 AQTLETKATVTSAEVSQDGRYIITADGSSVKFWDANYFGLVKSYNMPCNVESASLEPKYG 240
QTLETKA VTSAEVSQD R+I TADGSSVKFWDAN+FGLVKSY+MPC VESASLEPK G
Sbjct: 181 VQTLETKAPVTSAEVSQDSRFITTADGSSVKFWDANHFGLVKSYDMPCTVESASLEPKSG 240
Query: 241 NKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLG 300
+KFI GGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQL
Sbjct: 241 SKFIVGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLS 300
Query: 301 PATSDEQESPPNANGKLKVNTVSDAARKIEGFHLPKDGQTE 341
P +D+ E+ N+NGK V V++ ARKIEGFH+PK+ + +
Sbjct: 301 PPNADDNEA-VNSNGKPTVG-VNEVARKIEGFHIPKEEEQQ 339
>AK111547
Length = 389
Score = 606 bits (1563), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/336 (85%), Positives = 313/336 (93%), Gaps = 2/336 (0%)
Query: 1 MDRKKAGVPLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGH 60
M++KK VPLVCHGHSRPVVDLFYSPVTPDG FLISASKD NPM+RNG+TGDWIGTF+GH
Sbjct: 45 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGYFLISASKDGNPMLRNGETGDWIGTFQGH 104
Query: 61 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTG 120
KGAVWSCCLDTNALRAASGSADFSAKVWDALTG+ELHSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 105 KGAVWSCCLDTNALRAASGSADFSAKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 164
Query: 121 GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI 180
G+EKILR+YDMNRPDAAPRE+DK+PG+VRTVAWLHSDQ+ILS C+DMGGVRLWDVR+GKI
Sbjct: 165 GVEKILRVYDMNRPDAAPRELDKAPGNVRTVAWLHSDQTILSSCSDMGGVRLWDVRTGKI 224
Query: 181 AQTLETKATVTSAEVSQDGRYIITADGSSVKFWDANYFGLVKSYNMPCNVESASLEPKYG 240
QTLETKA VTSAEVSQD R+I TADGSSVKFWDAN+FGLVKSY+MPC VESASLEPK G
Sbjct: 225 VQTLETKAPVTSAEVSQDSRFITTADGSSVKFWDANHFGLVKSYDMPCTVESASLEPKSG 284
Query: 241 NKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLG 300
+KFI GGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQL
Sbjct: 285 SKFIVGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQLS 344
Query: 301 PATSDEQESPPNANGKLKVNTVSDAARKIEGFHLPK 336
P +D+ E+ N+NGK V V++ ARKIEGFH+PK
Sbjct: 345 PPNADDNEA-VNSNGKPTVG-VNEVARKIEGFHIPK 378
>Os08g0308100 Similar to TGF-beta receptor-interacting protein 1
Length = 326
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 152/322 (47%), Gaps = 44/322 (13%)
Query: 9 PLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGHKGAVWSCC 68
P++ GH RP+ L Y+ DG L S +KD P + D GD +GT+ GH GAVWSC
Sbjct: 3 PILMKGHERPLTFLRYNR---DGDLLFSCAKDHTPNVWFADNGDRLGTYRGHNGAVWSCD 59
Query: 69 LDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTGGLEKILRI 128
+ ++ R +GSAD +AK+WD TG EL +F R+ F+ + GL I
Sbjct: 60 VSRDSTRLITGSADQTAKLWDVQTGRELFTFRFDAPARSVEFA------IGDGLAVITTD 113
Query: 129 YDM-NRPDAAPREIDKSP---------------GSVRTVAWLHSDQSILSCCTDMGGVRL 172
M N P A + I + P G + W +++I++ D +R+
Sbjct: 114 NFMENVPTAQVKRIAEDPDDQSEESLLVITGIKGRINRAVWGPLNRTIITAGED-ATIRI 172
Query: 173 WDVRSGKIAQTLET----KATVTSAEVSQDGRYIITAD-GSSVKFWDANYFGLVKSYNMP 227
WD +G+ + + + T+TS S D + +T S K WD L+K+Y
Sbjct: 173 WDTETGQCLKESDKEQGHQKTITSLSKSADWSHFLTGSLDKSAKLWDTRTLTLIKTYVTE 232
Query: 228 CNVESASLEPKYGNKFIAGGED-MWVHVFD---------FF---TGEEITCNKGHHGPVH 274
V + + P + I GG+D M V + D FF EEI KGH GP++
Sbjct: 233 RPVNAVDISPLLDHVVIGGGQDAMNVTMTDRRAGKFEAKFFHKILQEEIGGVKGHFGPIN 292
Query: 275 CVRFAPGGESYASGSEDGTIRI 296
+ F P G S++SG EDG +R+
Sbjct: 293 ALAFNPDGRSFSSGGEDGYVRL 314
>Os05g0256000 Similar to TGF-beta receptor-interacting protein 1
Length = 326
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 149/322 (46%), Gaps = 44/322 (13%)
Query: 9 PLVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGHKGAVWSCC 68
P++ GH RP+ L Y+ DG L S +KD P + D GD +GT+ GH GAVWSC
Sbjct: 3 PILMKGHERPLTFLRYNR---DGDLLFSCAKDHTPNVWFADNGDRLGTYSGHNGAVWSCD 59
Query: 69 LDTNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTGGLEKILRI 128
+ ++ R +GSAD +AK+WD TG EL +F R+ F+ + GL I
Sbjct: 60 VSRDSTRLITGSADQTAKLWDVQTGAELFTFRFDAPARSVEFA------IGDGLAVITTD 113
Query: 129 YDM-NRPDAAPREIDKSP---------------GSVRTVAWLHSDQSILSCCTDMGGVRL 172
M N P A + I P G + W +++I++ D +R+
Sbjct: 114 NFMGNVPTAQVKRIADDPDDQSEESLLVISGIKGRINRAVWGPLNRTIITAGED-ATIRI 172
Query: 173 WDVRSGKIAQTLET----KATVTSAEVSQDGRYIITAD-GSSVKFWDANYFGLVKSYNMP 227
WD +G + + T+TS S D + +T S K WD L+K+Y
Sbjct: 173 WDTETGTCLNESDKEQGHQKTITSLSKSADWSHFLTGSLDKSAKLWDTRTLTLIKTYVTE 232
Query: 228 CNVESASLEPKYGNKFIAGGED-MWVHVFD---------FF---TGEEITCNKGHHGPVH 274
V + + P + I GG+D M V + D FF EEI KGH GP++
Sbjct: 233 RPVNAVDISPLLDHVVIGGGQDAMNVTMTDRRAGKFEAKFFHKILQEEIGGVKGHFGPIN 292
Query: 275 CVRFAPGGESYASGSEDGTIRI 296
+ F P G S++SG EDG +R+
Sbjct: 293 ALAFNPDGRSFSSGGEDGYVRL 314
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 119/302 (39%), Gaps = 60/302 (19%)
Query: 10 LVCHGHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDWIGTFEGHKGAVWSCCL 69
+V GH V+DL + T DG +ISAS D + + +TG + H V SCC
Sbjct: 90 MVLRGHKNAVLDLQW---TTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCP 146
Query: 70 DTN-ALRAASGSADFSAKVWDALTGEELHSFEHKHIVRACAFSEDTHLLLTGGLEKILRI 128
SGS D +AK+WD + + K+ + A +FSE + TGGL+
Sbjct: 147 ARKWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDKYQITAVSFSEAADKVFTGGLD----- 201
Query: 129 YDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKIAQTLE-TK 187
V+ WD+R ++ + L+ +
Sbjct: 202 ---------------------------------------NDVKWWDLRKNEVTEYLKGHQ 222
Query: 188 ATVTSAEVSQDGRYIIT-ADGSSVKFWDANYFGL----VKS-----YNMPCNVESASLEP 237
+T ++S DG Y++T A + +K WD + +K+ +N N+ S P
Sbjct: 223 DMITGMQLSPDGSYLLTNAMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKNLLKCSWSP 282
Query: 238 KYGNKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIW 297
K AG D V+++D + + GH+G V+ F P S D I +
Sbjct: 283 D-NRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHPTEPVIGSCGSDKQIYLG 341
Query: 298 QL 299
+L
Sbjct: 342 EL 343
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 28/305 (9%)
Query: 14 GHSRPVVDLFYSPVTPDGCFLISASKDSNPMIRNGDTGDW---IGTFEGHKGAVWSCCLD 70
GH R V + +SP DG L SAS D ++R T D + GH V
Sbjct: 17 GHRRAVSAVKFSP---DGRLLASASADK--LLRVWSTSDLASPVAELAGHGEGVSDLAFS 71
Query: 71 TNALRAASGSADFSAKVWDALTGEELHSFEHKHIVRAC----------AFSEDTHLLLTG 120
+ AS S D + ++WD G +++ AFS ++L +G
Sbjct: 72 PDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSPHGNMLASG 131
Query: 121 GLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGVRLWDVRSGKI 180
++ +R++++ R R + V +V + I+S D G R+WD +G
Sbjct: 132 SFDETVRVWEV-RSGRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYD-GLCRIWDSATGHC 189
Query: 181 AQTL--ETKATVTSAEVSQDGRYIITAD-GSSVKFWDANYFGLVKSYNMPCNVE---SAS 234
+TL + V+ A+ S +G++++ A S ++ W+ + +K+Y N + A+
Sbjct: 190 IKTLIDDESPPVSFAKFSPNGKFVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAA 249
Query: 235 LEPKYGNKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDG-- 292
G ++G ED V+++D + + + +GH V V P ASG DG
Sbjct: 250 FSITNGKYIVSGSEDKCVYIWDLQSRKILQKLEGHTDTVIAVSCHPNENMIASGGLDGDK 309
Query: 293 TIRIW 297
T+++W
Sbjct: 310 TVKVW 314
>AK111235
Length = 351
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 53/293 (18%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEHKHI-VRACAFSEDT 114
T +GH +++ T+ S S D +WDA T ++H+ + V CA+S
Sbjct: 60 TLKGHLAKIYAMHWSTDRRHLVSASQDGKLIIWDAYTTNKVHAIPLRSSWVMTCAYSPSG 119
Query: 115 HLLLTGGLEKILRIYDMNR---PDAAPREIDKSPGSVRTVAWLHSDQSILSCCTDMGGV- 170
+ + GGL+ I IY+++ P RE+ G + ++ SD+ I + DM V
Sbjct: 120 NYVACGGLDNICSIYNLSAREGPTRVARELSGHSGYLSCCRFI-SDKRIPTSSGDMTCVL 178
Query: 171 -----------------------------------------RLWDVRSGKIAQTLET-KA 188
+LWD+R K QT +
Sbjct: 179 WDLETGSKVHEFADHLGDVMSLSINPLDHNQFVSGACDAFAKLWDIRQQKCVQTFAAHDS 238
Query: 189 TVTSAEVSQDGRYIIT-ADGSSVKFWDANYFGLVKSYNMP---CNVESASLEPKYGNKFI 244
+ + + +G T +D +S + +D + SY +P C + S + G
Sbjct: 239 DINAIQFFPNGNAFGTGSDDASCRLFDIRADRELASYQIPEPVCGITSVAFSVS-GRLLF 297
Query: 245 AGGEDMWVHVFDFFTGEEITCNKGHHGPVHCVRFAPGGESYASGSEDGTIRIW 297
AG +D V+D GE + +GH V C+ + S +GS D +RIW
Sbjct: 298 AGYDDFECKVWDVLRGERVGTLQGHDNRVSCLGVSNDALSLCTGSWDSMLRIW 350
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 93 GEELHSF-EHKHIVRACAF-SEDTHLLLTGGLEKILRIYDMNRPDAAPREIDKSPGSVRT 150
G L F H VR+ + + + + +TGG ++ + ++ + + + GSV
Sbjct: 7 GYRLQEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGK-QTPLLSLSGHTGSVEA 65
Query: 151 VAWLHSDQSILSCCTDMGGVRLWDVRSGKIAQTLE-TKATVTSAEVSQDGRYIITADGSS 209
V + ++ +L+ ++ G ++LWD+ K+ ++L +++ TS E G + A GSS
Sbjct: 66 VEFDTAEVLVLAGSSN-GSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFF--ASGSS 122
Query: 210 ---VKFWDANYFGLVKSYN-MPCNVESASLEPKYGNKFIAGGEDMWVHVFDFFTGEEITC 265
+K WD G + +Y + + P G + GGED V V+D G+ +
Sbjct: 123 DTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPD-GRWVVTGGEDNIVKVWDLTAGKLLHD 181
Query: 266 NKGHHGPVHCVRFAPGGESYASGSEDGTIRIWQL 299
K H G + C+ F P A+GS D T++ W L
Sbjct: 182 FKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDL 215
>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
subunit B1) (p80 katanin)
Length = 875
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 101 HKHIVRACAFSEDT-HLLLTGGLEKILRIYDMNRPDAAPREIDKSPGSVRTVAWLHSDQS 159
H V F T +L+TGG ++ + ++ + +P ++ + V +V++ S ++
Sbjct: 15 HASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKP-SSILSLSGLTSPVESVSF-DSSEA 72
Query: 160 ILSCCTDMGGVRLWDVRSGKIAQTLE-TKATVTSAEVSQDGRYIITADGSS---VKFWDA 215
++ G +++WDV K+ +T +++ S + G + A GSS +K WD
Sbjct: 73 MIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFHPFGEFF--ASGSSDTNMKIWDM 130
Query: 216 NYFGLVKSYN-MPCNVESASLEPKYGNKFIAGGEDMWVHVFDFFTGEEITCNKGHHGPVH 274
G + +Y ++ P G ++GG D V ++D G+ + + H GP++
Sbjct: 131 RKKGCIHTYKGHTRRIDVLRFTPD-GRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPIN 189
Query: 275 CVRFAPGGESYASGSEDGTIRIWQL---------GPATSDEQESPPNANGKLKVN 320
C+ F P A+GS D T++ W L GP S E P + + N
Sbjct: 190 CLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPENSREYFVPASVVRSMTFN 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,800,321
Number of extensions: 626935
Number of successful extensions: 2333
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2341
Number of HSP's successfully gapped: 13
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)