Os08g0308100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TGF-beta receptor-interacting protein 1.
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Os08g0308100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TGF-beta receptor-interacting protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.2 | 0.206 | 11.2 | 1.04 | 0.833 | -0.992 | 0.228 | 1.04 | 0.117 | 16.9 | 13.14 | 427 | -- | -- |
| 19.93 | 0.208 | 11.2 | 0.897 | 0.831 | -0.965 | 0.478 | -- | 0.0973 | 17 | 7.583 | 480 | -- | -- |
| 19.3 | 0.205 | 11.2 | 1.06 | 0.837 | -0.989 | -- | 1.23 | 0.124 | 16.8 | 12.49 | 408 | -- | -- |
| 20.35 | 0.21 | 11.2 | 0.867 | 0.827 | -0.951 | -- | -- | 0.0711 | 16.9 | 6.986 | 453 | -- | -- |
| 34.23 | 0.272 | 11.2 | 1.1 | -- | -0.938 | -- | 0.811 | 0.13 | -- | 14.6 | 1205 | -- | -- |
| 30.37 | 0.258 | 11.2 | 0.652 | 0.586 | -- | 0.239 | -- | -0.071 | 16.4 | -- | -- | -- | -- |
| 30.53 | 0.259 | 11.2 | 0.654 | 0.588 | -- | -- | -- | -0.0697 | 16.4 | -- | -- | -- | -- |
| 34.61 | 0.274 | 11.2 | 0.92 | -- | -0.872 | -- | -- | 0.0885 | -- | 15.28 | 1207 | -- | -- |
| 38.01 | 0.287 | 11.2 | -- | 0.719 | -0.554 | -- | -- | -0.0749 | 16.7 | 7.158 | 404 | -- | -- |
| 49.07 | 0.327 | 11.2 | 0.631 | -- | -- | -- | -- | -0.0852 | -- | -- | -- | -- | -- |
| 41.79 | 0.302 | 11.2 | -- | 0.575 | -- | -- | -- | -0.142 | 16.4 | -- | -- | -- | -- |
| 53.51 | 0.341 | 11.2 | -- | -- | -0.34 | -- | -- | -0.146 | -- | 23.85 | 1239 | -- | -- |
| 59.56 | 0.36 | 11.2 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 5 | 18.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 13 | 19.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 19 | 19.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 26 | 19.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 34 | 19.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 60 | 19.38 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 103 | 19.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 112 | 19.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 123 | 19.59 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 126 | 19.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 142 | 19.64 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 147 | 19.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 187 | 19.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 221 | 19.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 227 | 19.81 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 245 | 19.83 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 282 | 19.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 326 | 19.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 328 | 19.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 367 | 19.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 545 | 19.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 703 | 20.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 876 | 20.11 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 952 | 20.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 14 |