BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0958500 Os01g0958500|AK072960
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0958500 Similar to RNA binding protein-like 455 e-128
Os06g0622900 Similar to RNA-binding region containing prote... 152 3e-37
Os02g0714000 Similar to Yarrowia lipolytica chromosome C of... 147 7e-36
Os03g0286500 Similar to RNA-binding region containing prote... 147 9e-36
Os02g0755400 Similar to RNA recognition motif-containing pr... 140 1e-33
Os03g0245900 129 2e-30
Os01g0876800 RNA-binding region RNP-1 (RNA recognition moti... 105 3e-23
Os01g0614500 RNA-binding region RNP-1 (RNA recognition moti... 92 5e-19
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 80 2e-15
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 78 9e-15
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 76 4e-14
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 71 1e-12
AK120313 69 3e-12
Os01g0265800 Similar to Sulfated surface glycoprotein 185 p... 69 4e-12
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 69 4e-12
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 68 9e-12
>Os01g0958500 Similar to RNA binding protein-like
Length = 310
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/310 (76%), Positives = 238/310 (76%)
Query: 1 MAVSXXXXXXXXXQFGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGR 60
MAVS QFGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGR
Sbjct: 1 MAVSAGGGGGAAGQFGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGR 60
Query: 61 SKGYGFVTFREPEAAMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMRAM 120
SKGYGFVTFREPEAAMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMRAM
Sbjct: 61 SKGYGFVTFREPEAAMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMRAM 120
Query: 121 KSIIQTGGGGASLSMADHGIQQGIPTYNVYGYSPYFSDYGYPLSXXXXXXXXXXXXXMFX 180
KSIIQTGGGGASLSMADHGIQQGIPTYNVYGYSPYFSDYGYPLS MF
Sbjct: 121 KSIIQTGGGGASLSMADHGIQQGIPTYNVYGYSPYFSDYGYPLSYYQAYGGLGAQYQMFA 180
Query: 181 XXXXXXXXXLTMANPTGGGLYSPYFQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
LTMANPTGGGLYSPYFQY
Sbjct: 181 GGAAAGAAGLTMANPTGGGLYSPYFQYGPAVAANAAAAGYAGMQYPQMYQYAAAAAAVGA 240
Query: 241 XXXXXXXSQLTAVAGLQQYAGTVALAPNSTGQAAGMTMSLTAPTLPAPSPQYQYRLISSH 300
SQLTAVAGLQQYAGTVALAPNSTGQAAGMTMSLTAPTLPAPSPQYQYRLISSH
Sbjct: 241 PTAATTASQLTAVAGLQQYAGTVALAPNSTGQAAGMTMSLTAPTLPAPSPQYQYRLISSH 300
Query: 301 VAAAPEKPLA 310
VAAAPEKPLA
Sbjct: 301 VAAAPEKPLA 310
>Os06g0622900 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 275
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 80/98 (81%)
Query: 15 FGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEA 74
+GDTT TKVFVGGLAWET+ EG+R +FE +G+ILEAVVITD+ TGRSKGYGFVTFR+P++
Sbjct: 27 YGDTTYTKVFVGGLAWETRSEGLRAHFEAYGEILEAVVITDRATGRSKGYGFVTFRDPDS 86
Query: 75 AMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQP 112
A AC DPYPVIDGRRANCNLA LG A L+P
Sbjct: 87 ARMACMDPYPVIDGRRANCNLAILGRPGPDIPFAPLRP 124
>Os02g0714000 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 287
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
Query: 15 FGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEA 74
FGDTT TKVFVGGLAWET E +R ++++FG+ILEAVVITD+++GRSKGYGFVTFR+PE+
Sbjct: 31 FGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPES 90
Query: 75 AMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMR---AMKSIIQTGGGGA 131
A KAC DP PVIDGRRANCNLA LG R++ A +P + + + GG G
Sbjct: 91 ARKACEDPTPVIDGRRANCNLASLG--RAQPAVPLGRPRSAGSYFGVPVPRGVYVGGYGQ 148
Query: 132 SLSMADHGIQQGIPTYNVYGYSPYFSDYGYP 162
++ G QG P Y Y+ Y ++Y YP
Sbjct: 149 HRTLP-LGYYQGFPVPQ-YSYTTYGTEYIYP 177
>Os03g0286500 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 310
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 15 FGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEA 74
FGDTTLTKVFVGGLAWET K+ +R +FE+FGDILEAV+I+DK TGRSKGYGFVTF+E +A
Sbjct: 27 FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFKEADA 86
Query: 75 AMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQP 112
A KAC D PVI+GRRANCNLA LG + L+P
Sbjct: 87 AKKACEDATPVINGRRANCNLASLGAKPRAQPPHLLRP 124
>Os02g0755400 Similar to RNA recognition motif-containing protein SEB-4
Length = 176
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 82/109 (75%), Gaps = 5/109 (4%)
Query: 14 QFGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPE 73
+FGDTTLTKVFVGGLAWET +G++ +F+Q+G+ILEAVVITD+ T RSKGYGFVTFREPE
Sbjct: 39 RFGDTTLTKVFVGGLAWETPSKGLQDHFQQYGEILEAVVITDRETSRSKGYGFVTFREPE 98
Query: 74 AAMKACFDPYPVIDGRRANCNLAYLG-----VQRSKAAAASLQPYAGHM 117
+A +A +P P I GRRANCN+A +G R +A SL P HM
Sbjct: 99 SAREAVRNPNPTIGGRRANCNIASMGPPRPSPSRGRAPRGSLFPDQPHM 147
>Os03g0245900
Length = 101
Score = 129 bits (325), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 16 GDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAA 75
GDTT TK+FVGGL WET+ + +R +FEQFG+I+EAVVI DK+TGRSKGYGFVTFR+P+ A
Sbjct: 3 GDTTFTKLFVGGLPWETRGDAVRRHFEQFGEIVEAVVIADKHTGRSKGYGFVTFRDPDGA 62
Query: 76 MKACFDPYPVIDGRRANCNLAYLGVQR 102
+A DP PVIDGRRANCNLA G R
Sbjct: 63 ARALQDPTPVIDGRRANCNLAAFGAAR 89
>Os01g0876800 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 62
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/54 (92%), Positives = 51/54 (94%)
Query: 14 QFGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFV 67
QFGDTT TKVFVGGLAWETQKE MR YFEQFG+ILEAVVITDKNTGRSKGYGFV
Sbjct: 9 QFGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYGFV 62
>Os01g0614500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 447
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 52/73 (71%)
Query: 17 DTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAM 76
D L K+FV GL WET + +R F FGD+ EAVVITDK+TGRSKGYGFVTFR ++A+
Sbjct: 72 DPALRKLFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAV 131
Query: 77 KACFDPYPVIDGR 89
A +P IDGR
Sbjct: 132 LALKEPSKKIDGR 144
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 472
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
K+FVGG++WET ++ +R YF +FG++ EAV++ D+NTGR++G+GFV F + A + D
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMD 66
Query: 82 PYPVIDGR 89
+ +IDGR
Sbjct: 67 KH-MIDGR 73
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
K+F+GG++WET +E +R +F +GD+ +A V+ DK TGR +G+GFV F +P + A D
Sbjct: 7 KLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAALVD 66
Query: 82 PYPVIDGRRANCNLAYLGVQRSKAAAAS 109
P+ +DGR + A ++ A AA+
Sbjct: 67 PH-TLDGRTVDVKRALSREEQQAAKAAN 93
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 467
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
K+F+GG++W+T ++ +R YF+++G+++EAV++ D+ TGR++G+GF+ F +P A + +
Sbjct: 7 KLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIME 66
Query: 82 PYPVIDGR 89
+ +IDGR
Sbjct: 67 KH-MIDGR 73
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 16 GDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAA 75
G + K+FVGGLA + R YFEQFG I + VV+ D NT R +G+GF+T+ +A
Sbjct: 101 GPSRTKKIFVGGLASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAV 160
Query: 76 MKACFDPYPVIDGR 89
KA F + ++G+
Sbjct: 161 DKALFKTFHELNGK 174
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
K+FVGG+AWET +E +FE++G I ++V++ DK+T +G+GFVTF +P K D
Sbjct: 67 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED 126
Query: 82 PYPVIDGR 89
+ VIDGR
Sbjct: 127 EH-VIDGR 133
>AK120313
Length = 409
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
K+FVGG+AWET +E +FE++G I ++V++ DK+T +G GFVTF +P K D
Sbjct: 79 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVIDKVLED 138
Query: 82 PYPVIDGR 89
+ VIDGR
Sbjct: 139 EH-VIDGR 145
>Os01g0265800 Similar to Sulfated surface glycoprotein 185 precursor (SSG 185)
Length = 524
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 17 DTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAM 76
D L K+FV GL W+ E + F +G+I + V+TD+ TG+ KGYGF+ F A
Sbjct: 186 DPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGAR 245
Query: 77 KACFDPYPVIDGRRANCNLAYLG 99
A +P I R C LA +G
Sbjct: 246 AALREPQKKIGNRTTACQLASVG 268
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 21 TKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACF 80
TK+FVGGL+W T + ++ F FGD+ EA VI D+ +GRS+G+GFV+F + A K+
Sbjct: 37 TKLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDA-KSAM 95
Query: 81 DPY--PVIDGRRANCNLA 96
D ++GR N A
Sbjct: 96 DAMDGKELEGRSIRVNFA 113
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 22 KVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAMKACFD 81
+ FVGGLAW T + F FG+ILE+ +I D+ TGRS+G+GFVTF E AM+ +
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTF-SSEQAMRDAIE 67
Query: 82 PY--PVIDGRRANCNLA 96
+DGR N A
Sbjct: 68 GMNGKELDGRNITVNEA 84
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,769,246
Number of extensions: 330052
Number of successful extensions: 1437
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 20
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)