Os01g0958500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA binding protein-like.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0958500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RNA binding protein-like.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.6 | 0.31 | 8.52 | 0.79 | 0.481 | -0.778 | -0.327 | 1.7 | 0.634 | 9.13 | 20.45 | 1442 | -- | -- |
| 42.66 | 0.304 | 8.53 | 0.559 | 0.53 | -0.957 | -0.211 | -- | 0.676 | 9.26 | 16.32 | 11422 | -- | -- |
| 43.88 | 0.309 | 8.52 | 0.795 | 0.473 | -0.776 | -- | 1.79 | 0.636 | 9.57 | 20.98 | 1549 | -- | -- |
| 41.87 | 0.301 | 8.52 | 0.821 | 0.477 | -1.13 | -- | -- | 0.778 | 9.42 | 8.595 | 14245 | -- | -- |
| 52.86 | 0.339 | 8.52 | 0.899 | -- | -0.952 | -- | 2.09 | 0.677 | -- | 21.56 | 2156 | -- | -- |
| 61.06 | 0.366 | 8.62 | 0.0186 | 0.495 | -- | -0.292 | -- | 0.328 | 9.48 | -- | -- | -- | -- |
| 61.36 | 0.367 | 8.62 | 0.00855 | 0.495 | -- | -- | -- | 0.328 | 9.63 | -- | -- | -- | -- |
| 54.6 | 0.344 | 8.53 | 1.01 | -- | -1.2 | -- | -- | 0.775 | -- | 8.557 | 22428 | -- | -- |
| 47.74 | 0.322 | 8.58 | -- | 0.492 | -0.56 | -- | -- | 0.494 | 9.37 | 22.22 | 7177 | -- | -- |
| 75.87 | 0.407 | 8.63 | 0.00449 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 61.36 | 0.366 | 8.62 | -- | 0.495 | -- | -- | -- | 0.327 | 9.62 | -- | -- | -- | -- |
| 60.43 | 0.362 | 8.6 | -- | -- | -0.609 | -- | -- | 0.464 | -- | 22.34 | 6529 | -- | -- |
| 75.87 | 0.407 | 8.63 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 3 | 39.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 9 | 39.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 12 | 39.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 15 | 39.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 16 | 39.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 26 | 39.67 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 55 | 39.82 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 98 | 39.92 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 125 | 39.96 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 132 | 39.98 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 144 | 39.99 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 152 | 40.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 185 | 40.03 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 274 | 40.09 | temperature | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 315 | 40.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 400 | 40.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 402 | 40.19 | temperature | 25 | 43200 | < th | dose dependent | sin | 22 | NA |
| 485 | 40.24 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 505 | 40.25 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 506 | 40.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 508 | 40.25 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 721 | 40.33 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 849 | 40.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 921 | 40.39 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 926 | 40.39 | temperature | 10 | 43200 | > th | dose dependent | sin | 22 | NA |
| 977 | 40.41 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |