Os06g0622900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2.
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Os06g0622900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.41 | 0.232 | 10.7 | 0.0331 | 0.538 | 0.356 | -0.583 | -0.938 | 0.194 | 13.8 | 2 | 6 | -- | -- |
| 25.36 | 0.236 | 10.7 | 0.0591 | 0.522 | 0.181 | -0.511 | -- | 0.167 | 11.8 | 37.12 | 13 | -- | -- |
| 26.06 | 0.24 | 10.7 | 0.0391 | 0.578 | 0.0977 | -- | 0.432 | 0.173 | 11.8 | 2 | 6 | -- | -- |
| 26.06 | 0.238 | 10.7 | 0.0443 | 0.539 | 0.248 | -- | -- | 0.17 | 12 | 40.64 | 15 | -- | -- |
| 28.54 | 0.25 | 10.7 | -0.0114 | -- | -0.318 | -- | 0.514 | 0.136 | -- | 0.0001253 | 32 | -- | -- |
| 26.45 | 0.241 | 10.7 | 0.0577 | 0.462 | -- | -0.528 | -- | 0.171 | 11.7 | -- | -- | -- | -- |
| 27.62 | 0.246 | 10.7 | 0.0373 | 0.465 | -- | -- | -- | 0.169 | 11.9 | -- | -- | -- | -- |
| 28.79 | 0.25 | 10.7 | -0.0157 | -- | -0.336 | -- | -- | 0.118 | -- | 0.2358 | 97 | -- | -- |
| 26.09 | 0.238 | 10.7 | -- | 0.541 | 0.239 | -- | -- | 0.159 | 11.9 | 39.9 | 13 | -- | -- |
| 41.22 | 0.3 | 10.7 | 0.0232 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 27.66 | 0.246 | 10.7 | -- | 0.464 | -- | -- | -- | 0.165 | 11.9 | -- | -- | -- | -- |
| 28.72 | 0.25 | 10.7 | -- | -- | -0.346 | -- | -- | 0.126 | -- | 0.23 | 92 | -- | -- |
| 41.24 | 0.3 | 10.7 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.37 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 22.62 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 3 | 22.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 7 | 23.04 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 9 | 23.15 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 10 | 23.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 11 | 23.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 12 | 23.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 14 | 23.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 15 | 23.18 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 28 | 23.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 55 | 23.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 56 | 23.43 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 69 | 23.47 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 72 | 23.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 75 | 23.48 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 85 | 23.50 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 86 | 23.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 96 | 23.52 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 102 | 23.53 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 103 | 23.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 127 | 23.58 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 132 | 23.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 144 | 23.59 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 23 | 17 |
| 145 | 23.60 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 148 | 23.60 | radiation | 40.0 | 720 | < th | dose independent | rect. | 3 | 11 |
| 161 | 23.61 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 164 | 23.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 166 | 23.62 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 168 | 23.62 | radiation | 40.0 | 720 | < th | dose independent | rect. | 21 | 17 |
| 174 | 23.63 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 181 | 23.64 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 191 | 23.65 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 194 | 23.65 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 216 | 23.67 | temperature | 30.0 | 90 | < th | dose independent | rect. | 16 | 7 |
| 219 | 23.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 226 | 23.67 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 230 | 23.67 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 236 | 23.68 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 237 | 23.68 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 239 | 23.68 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 253 | 23.69 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 254 | 23.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 261 | 23.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 263 | 23.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 264 | 23.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 270 | 23.69 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 276 | 23.69 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 278 | 23.69 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 279 | 23.70 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 281 | 23.70 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 286 | 23.70 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 288 | 23.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 291 | 23.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 293 | 23.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 300 | 23.70 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 302 | 23.70 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 305 | 23.70 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 309 | 23.70 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 2 | 14 |
| 311 | 23.71 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 316 | 23.71 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 335 | 23.72 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 357 | 23.72 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 394 | 23.74 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 402 | 23.74 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 404 | 23.74 | humidity | 60.0 | 90 | > th | dose independent | rect. | 23 | 17 |
| 410 | 23.74 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 435 | 23.75 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 441 | 23.75 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 452 | 23.75 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 454 | 23.76 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 455 | 23.76 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 490 | 23.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 498 | 23.77 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 534 | 23.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 554 | 23.78 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 585 | 23.79 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 592 | 23.79 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 595 | 23.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 602 | 23.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 620 | 23.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 623 | 23.80 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 627 | 23.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 646 | 23.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 691 | 23.81 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 731 | 23.82 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 20 |
| 752 | 23.82 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 766 | 23.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 789 | 23.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 819 | 23.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 820 | 23.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 825 | 23.84 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 829 | 23.84 | humidity | 60.0 | 90 | > th | dose independent | rect. | 16 | 7 |
| 847 | 23.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 849 | 23.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 874 | 23.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 899 | 23.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 907 | 23.85 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 908 | 23.85 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 931 | 23.86 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 997 | 23.87 | radiation | 30.0 | 720 | < th | dose independent | rect. | 23 | 15 |
| 1000 | 23.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 19 |