FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0286500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0563) R2 : 0.414
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.46 (0.141) R2dC : 0.395 R2C : 0.354
β3 : -1.61 (0.243) R2dE : 0.061 R2E : 0.00707
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.261 (0.121) R2dN8 : 0.00815 R2N8 : -0.000228
σ : 1.05
deviance : 509.86
__
_____
C
peak time of C : 3.18
E
wheather : temperature
threshold : 19.01
memory length : 1088
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.97 1.06 4.57 -0.121 2.29 -0.337 1.81 2.64 0.193 3.39 20.2 100 -- --
522.11 1.06 4.62 -0.0487 2.44 -0.833 -0.364 -- 0.335 3.19 20.4 1068 -- --
513.32 1.06 4.57 -0.146 2.3 -0.432 -- 2.18 0.21 3.37 20.51 274 -- --
510.31 1.05 4.6 -0.137 2.37 -1.52 -- -- 0.268 3.3 19.1 1262 -- --
796.9 1.32 4.57 -0.109 -- -0.988 -- 1.35 0.311 -- 20.4 190 -- --
543.96 1.09 4.65 -0.711 2.35 -- 0.559 -- -0.00113 3.34 -- -- -- --
544.96 1.09 4.65 -0.722 2.36 -- -- -- -0.0044 3.34 -- -- -- --
650.01 1.19 4.54 0.198 -- -1.62 -- -- 0.525 -- 26.3 108 -- --
509.86 1.05 4.59 -- 2.46 -1.61 -- -- 0.261 3.18 19.01 1088 -- --
858.15 1.37 4.65 -0.622 -- -- -- -- 0.0578 -- -- -- -- --
558.68 1.11 4.63 -- 2.34 -- -- -- 0.076 3.34 -- -- -- --
641.84 1.18 4.54 -- -- -1.55 -- -- 0.536 -- 26.28 66 -- --
868.35 1.38 4.63 -- -- -- -- -- 0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 480.23 radiation 20 14400 < th dose independent rect. 5 1
2 492.88 wind 5 4320 > th dose dependent rect. 18 1
3 495.24 wind 7 4320 > th dose independent rect. 18 1
4 495.24 wind 7 4320 < th dose independent rect. 18 1
5 495.76 radiation 20 14400 < th dose independent rect. 3 3
6 495.80 humidity 70 14400 < th dose dependent rect. 21 1
15 495.85 humidity 60 14400 > th dose independent rect. 5 3
17 496.52 humidity 60 14400 > th dose independent rect. 3 5
18 496.76 humidity 70 14400 < th dose independent rect. 21 1
29 497.15 temperature 15 10 > th dose dependent rect. 7 21
30 497.21 temperature 10 10 > th dose dependent rect. 6 23
34 498.38 temperature 20 90 > th dose independent rect. 3 18
35 498.38 temperature 20 270 > th dose independent rect. 5 21
37 498.41 temperature 10 90 > th dose dependent rect. 6 22
41 498.88 humidity 70 14400 > th dose independent rect. 21 3
44 499.01 temperature 20 30 > th dose independent rect. 7 21
45 499.12 humidity 70 14400 > th dose independent rect. 21 9
49 499.30 humidity 70 14400 < th dose dependent rect. 20 11
50 499.46 wind 7 4320 > th dose independent rect. 15 4
51 499.49 wind 3 43200 < th dose independent rect. 24 1
52 499.55 humidity 60 14400 > th dose independent rect. 1 7
53 499.56 humidity 50 14400 < th dose dependent rect. 9 1
55 499.69 wind 7 4320 < th dose independent rect. 15 4
57 499.74 temperature 20 720 > th dose independent rect. 22 19
58 499.75 humidity 70 14400 > th dose independent rect. 21 1
67 500.13 temperature 20 90 > th dose independent rect. 1 20
69 500.23 temperature 20 90 < th dose independent rect. 3 20
73 500.54 wind 3 43200 > th dose independent rect. 24 1
80 500.79 temperature 20 90 > th dose independent rect. 23 22
89 501.06 radiation 20 4320 > th dose dependent rect. 7 1
90 501.07 temperature 20 1440 > th dose independent rect. 21 4
95 501.14 temperature 20 1440 > th dose independent rect. 22 2
141 501.68 wind 1 43200 > th dose dependent rect. 23 5
159 501.77 humidity 70 14400 > th dose independent rect. 20 11
160 501.79 temperature 20 1440 < th dose independent rect. 21 4
163 501.85 radiation 1 4320 > th dose independent rect. 4 1
173 501.85 radiation 1 4320 > th dose dependent rect. 4 1
193 502.16 temperature 20 1440 > th dose independent rect. 17 9
194 502.18 temperature 20 1440 < th dose independent rect. 22 2
201 502.26 wind 3 43200 < th dose independent rect. 23 5
227 502.53 wind 5 43200 < th dose dependent rect. 24 4
231 502.57 temperature 20 720 > th dose independent rect. 1 1
232 502.57 temperature 20 720 > th dose independent rect. 22 15
236 502.64 temperature 20 1440 < th dose independent rect. 17 9
244 502.71 wind 1 43200 > th dose dependent rect. 24 1
250 502.77 wind 5 43200 > th dose independent rect. 12 1
253 502.86 temperature 20 10 > th dose dependent rect. 7 6
265 502.96 humidity 70 14400 < th dose independent rect. 20 11
280 503.10 humidity 60 14400 > th dose independent rect. 19 13
281 503.10 temperature 20 720 > th dose independent rect. 14 21
283 503.12 radiation 20 14400 < th dose independent rect. 1 5
289 503.19 radiation 1 4320 < th dose independent rect. 9 1
291 503.19 radiation 1 4320 < th dose dependent rect. 9 1
308 503.33 humidity 90 14400 > th dose dependent rect. 6 1
311 503.36 wind 3 43200 > th dose independent rect. 22 7
315 503.42 atmosphere 1010 30 < th dose independent rect. 7 6
323 503.49 temperature 20 90 < th dose independent rect. 23 23
329 503.56 temperature 20 1440 < th dose independent rect. 21 15
332 503.59 humidity 50 14400 > th dose dependent rect. 5 1
350 503.75 temperature 30 90 < th dose dependent rect. 3 20
351 503.76 temperature 15 14400 < th dose dependent rect. 4 1
353 503.78 humidity 90 4320 < th dose independent rect. 2 1
360 503.81 temperature 20 720 > th dose independent sin 5 NA
375 503.94 wind 9 4320 > th dose independent rect. 17 14
377 503.95 wind 5 43200 < th dose independent rect. 12 1
388 504.01 humidity 90 14400 > th dose independent rect. 6 1
392 504.03 humidity 90 14400 > th dose dependent rect. 5 5
413 504.11 temperature 15 14400 < th dose independent rect. 9 2
421 504.15 wind 5 43200 < th dose dependent rect. 2 1
440 504.22 humidity 50 14400 < th dose independent rect. 9 1
453 504.31 humidity 80 43200 < th dose independent rect. 24 1
456 504.33 humidity 80 43200 < th dose dependent rect. 23 1
468 504.41 wind 9 43200 > th dose independent rect. 10 1
483 504.47 radiation 40 4320 < th dose independent rect. 3 5
492 504.50 temperature 15 14400 > th dose independent rect. 9 3
502 504.55 temperature 20 4320 > th dose independent rect. 9 1
508 504.58 temperature 30 90 < th dose dependent rect. 3 16
512 504.60 wind 7 43200 > th dose dependent rect. 10 1
515 504.62 humidity 70 14400 > th dose independent rect. 20 6
518 504.62 humidity 90 14400 > th dose dependent rect. 5 8
531 504.68 temperature 20 90 < th dose independent rect. 3 18
536 504.71 wind 5 1440 < th dose independent rect. 13 1
549 504.79 temperature 15 10 > th dose dependent rect. 7 11
562 504.82 humidity 50 43200 > th dose independent rect. 21 6
576 504.85 radiation 30 4320 > th dose independent rect. 7 1
604 504.90 humidity 80 43200 > th dose independent rect. 24 1
621 504.95 temperature 20 1440 > th dose independent sin 13 NA
622 504.95 wind 9 43200 < th dose independent rect. 10 1
639 504.99 wind 1 43200 > th dose dependent rect. 2 1
679 505.10 temperature 15 14400 < th dose independent rect. 5 7
697 505.14 humidity 50 14400 > th dose dependent rect. 23 9
735 505.22 temperature 20 1440 < th dose independent sin 13 NA
761 505.27 humidity 90 14400 < th dose independent rect. 6 1
789 505.30 temperature 15 14400 < th dose dependent sin 7 NA
818 505.35 humidity 90 4320 < th dose independent rect. 1 19
822 505.36 radiation 40 4320 < th dose independent rect. 1 7
834 505.37 temperature 20 1440 < th dose dependent rect. 1 1
899 505.47 temperature 15 14400 < th dose independent rect. 21 4
927 505.50 wind 7 4320 > th dose independent rect. 14 17
930 505.50 temperature 20 1440 < th dose independent rect. 6 22
972 505.55 temperature 15 14400 < th dose independent rect. 24 1
985 505.56 wind 3 43200 < th dose independent rect. 22 11