BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0286500 Os03g0286500|AK060649
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0286500 Similar to RNA-binding region containing prote... 393 e-110
Os01g0958500 Similar to RNA binding protein-like 127 2e-29
Os02g0714000 Similar to Yarrowia lipolytica chromosome C of... 125 5e-29
Os03g0245900 120 1e-27
Os06g0622900 Similar to RNA-binding region containing prote... 119 3e-27
Os02g0755400 Similar to RNA recognition motif-containing pr... 116 2e-26
Os01g0876800 RNA-binding region RNP-1 (RNA recognition moti... 92 6e-19
Os01g0614500 RNA-binding region RNP-1 (RNA recognition moti... 82 6e-16
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 75 7e-14
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 72 4e-13
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 72 7e-13
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 69 4e-12
Os01g0265800 Similar to Sulfated surface glycoprotein 185 p... 69 5e-12
>Os03g0286500 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 310
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/310 (67%), Positives = 210/310 (67%)
Query: 1 MTMMGGXXXXXXXXXXXXXXXXXAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDIL 60
MTMMGG AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDIL
Sbjct: 1 MTMMGGQPQQTPPPPQVVQVQQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDIL 60
Query: 61 EAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXXTPVINGRRANCNLASLGAKPRAQPPH 120
EAVIISDKLTGRSKGYGFVTF TPVINGRRANCNLASLGAKPRAQPPH
Sbjct: 61 EAVIISDKLTGRSKGYGFVTFKEADAAKKACEDATPVINGRRANCNLASLGAKPRAQPPH 120
Query: 121 LLRXXXXXXXXXXXXXXXXXXXXXXXXXIAVGSRGVSPVPWXXXXXXXXXXXXXXXXXXX 180
LLR IAVGSRGVSPVPW
Sbjct: 121 LLRPSPPATPGPHAPALPSPHHHQPAPAIAVGSRGVSPVPWYYHPSTTPPPPPPPAAHYA 180
Query: 181 XXXXXXXXXXGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQGHFSYPA 240
GVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQGHFSYPA
Sbjct: 181 AHGGHHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQGHFSYPA 240
Query: 241 AAQGGMLAANGMMPVYPYYQYHYHGAQGLGVPAAHFFXXXXXXXXXXXXXXXXKPTVMAP 300
AAQGGMLAANGMMPVYPYYQYHYHGAQGLGVPAAHFF KPTVMAP
Sbjct: 241 AAQGGMLAANGMMPVYPYYQYHYHGAQGLGVPAAHFFPPVSAAAVTTVPAIISKPTVMAP 300
Query: 301 PKVEQVTGCS 310
PKVEQVTGCS
Sbjct: 301 PKVEQVTGCS 310
>Os01g0958500 Similar to RNA binding protein-like
Length = 310
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 67/87 (77%)
Query: 27 FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXX 86
FGDTTLTKVFVGGLAWET K+ +R +FE+FGDILEAV+I+DK TGRSKGYGFVTF
Sbjct: 15 FGDTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEA 74
Query: 87 XXXXXXXXTPVINGRRANCNLASLGAK 113
PVI+GRRANCNLA LG +
Sbjct: 75 AMKACFDPYPVIDGRRANCNLAYLGVQ 101
>Os02g0714000 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 287
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Query: 24 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXX 83
A+ FGDTT TKVFVGGLAWET + LR ++RFG+ILEAV+I+D+ +GRSKGYGFVTF
Sbjct: 28 ASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRD 87
Query: 84 XXXXXXXXXXXTPVINGRRANCNLASLGAKPRAQP 118
TPVI+GRRANCNLASLG RAQP
Sbjct: 88 PESARKACEDPTPVIDGRRANCNLASLG---RAQP 119
>Os03g0245900
Length = 101
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 66/91 (72%)
Query: 28 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXX 87
GDTT TK+FVGGL WET D +R HFE+FG+I+EAV+I+DK TGRSKGYGFVTF
Sbjct: 3 GDTTFTKLFVGGLPWETRGDAVRRHFEQFGEIVEAVVIADKHTGRSKGYGFVTFRDPDGA 62
Query: 88 XXXXXXXTPVINGRRANCNLASLGAKPRAQP 118
TPVI+GRRANCNLA+ GA R P
Sbjct: 63 ARALQDPTPVIDGRRANCNLAAFGAARRVHP 93
>Os06g0622900 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 275
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 64/88 (72%)
Query: 24 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXX 83
+ +GDTT TKVFVGGLAWET + LR HFE +G+ILEAV+I+D+ TGRSKGYGFVTF
Sbjct: 24 SGPYGDTTYTKVFVGGLAWETRSEGLRAHFEAYGEILEAVVITDRATGRSKGYGFVTFRD 83
Query: 84 XXXXXXXXXXXTPVINGRRANCNLASLG 111
PVI+GRRANCNLA LG
Sbjct: 84 PDSARMACMDPYPVIDGRRANCNLAILG 111
>Os02g0755400 Similar to RNA recognition motif-containing protein SEB-4
Length = 176
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 27 FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXX 86
FGDTTLTKVFVGGLAWET L++HF+++G+ILEAV+I+D+ T RSKGYGFVTF
Sbjct: 40 FGDTTLTKVFVGGLAWETPSKGLQDHFQQYGEILEAVVITDRETSRSKGYGFVTFREPES 99
Query: 87 XXXXXXXXTPVINGRRANCNLASLGAKPRAQP 118
P I GRRANCN+AS+G PR P
Sbjct: 100 AREAVRNPNPTIGGRRANCNIASMGP-PRPSP 130
>Os01g0876800 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 62
Score = 91.7 bits (226), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/53 (79%), Positives = 50/53 (94%)
Query: 27 FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 79
FGDTT TKVFVGGLAWET K+T+R++FE+FG+ILEAV+I+DK TGRSKGYGFV
Sbjct: 10 FGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYGFV 62
>Os01g0614500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 447
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 50/84 (59%)
Query: 24 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXX 83
AAA D L K+FV GL WET+ D+LR F FGD+ EAV+I+DK TGRSKGYGFVTF
Sbjct: 67 AAADRDPALRKLFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRH 126
Query: 84 XXXXXXXXXXXTPVINGRRANCNL 107
+ I+GR L
Sbjct: 127 ADSAVLALKEPSKKIDGRMTVTQL 150
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 472
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 41/48 (85%)
Query: 34 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 81
K+FVGG++WET +D LRE+F RFG++ EAVI+ D+ TGR++G+GFV F
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVF 54
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 467
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 44/48 (91%)
Query: 34 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 81
K+F+GG++W+T++D LRE+F+++G+++EAVI+ D+ TGR++G+GF+ F
Sbjct: 7 KLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVF 54
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 150
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 41/49 (83%)
Query: 33 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 81
TK+FVGGL+W T+ D+L+E F FGD+ EA +I+D+ +GRS+G+GFV+F
Sbjct: 37 TKLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSF 85
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 464
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%)
Query: 29 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 81
++ K+F+GG++WET ++ LR+HF +GD+ +A ++ DKLTGR +G+GFV F
Sbjct: 2 ESDQGKLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVF 54
>Os01g0265800 Similar to Sulfated surface glycoprotein 185 precursor (SSG 185)
Length = 524
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 25 AAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXX 84
AA D L K+FV GL W+ +TL E F +G+I + +++D+ TG+ KGYGF+ F
Sbjct: 182 AADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRR 241
Query: 85 XXXXXXXXXXTPVINGRRANCNLASLGAKP 114
I R C LAS+G P
Sbjct: 242 SGARAALREPQKKIGNRTTACQLASVGPVP 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,077,334
Number of extensions: 266189
Number of successful extensions: 771
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 13
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)