FiT-DB / Search/ Help/ Sample detail

Os02g0714000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0151) R2 : 0.518
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.679 (0.037) R2dC : 0.357 R2C : 0.324
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.38 (0.0318) R2dN8 : 0.194 R2N8 : 0.161
σ : 0.285
deviance : 37.22
__
_____
C
peak time of C : 2.18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.07 0.226 11.4 -0.802 0.686 -0.635 0.427 0.338 0.2 2.27 22.4 1868 -- --
23.15 0.224 11.4 -0.765 0.687 -0.726 0.421 -- 0.21 2.28 22 1860 -- --
23.56 0.228 11.4 -0.718 0.768 -0.637 -- 0.436 0.237 2.07 22.12 1800 -- --
23.74 0.228 11.4 -0.686 0.774 -0.742 -- -- 0.244 2.07 21.83 1800 -- --
49.67 0.328 11.4 -0.884 -- -0.614 -- 0.42 0.14 -- 25.8 2454 -- --
28.5 0.25 11.4 -0.54 0.689 -- 0.43 -- 0.321 2.22 -- -- -- --
29.18 0.253 11.4 -0.552 0.69 -- -- -- 0.318 2.2 -- -- -- --
49.86 0.329 11.4 -0.79 -- -0.647 -- -- 0.167 -- 25.4 2451 -- --
35.15 0.278 11.4 -- 0.728 -0.439 -- -- 0.345 2.1 21.83 1800 -- --
57.55 0.354 11.4 -0.523 -- -- -- -- 0.335 -- -- -- -- --
37.22 0.285 11.4 -- 0.679 -- -- -- 0.38 2.18 -- -- -- --
55.52 0.347 11.4 -- -- 0.778 -- -- 0.482 -- 50.76 2 -- --
64.77 0.376 11.4 -- -- -- -- -- 0.393 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.53 humidity 90 14400 > th dose dependent rect. 5 1
4 22.26 temperature 20 14400 > th dose independent rect. 21 1
5 22.27 temperature 20 14400 < th dose independent rect. 21 1
10 22.48 humidity 80 14400 > th dose dependent rect. 2 5
13 22.53 radiation 20 14400 > th dose independent rect. 6 1
34 22.67 temperature 20 90 > th dose independent rect. 17 16
35 22.69 humidity 80 43200 < th dose independent rect. 6 1
42 22.74 humidity 80 43200 > th dose independent rect. 6 1
51 22.84 temperature 20 1440 < th dose dependent rect. 5 1
57 22.88 wind 9 43200 > th dose independent rect. 8 10
60 22.91 wind 9 43200 < th dose independent rect. 8 10
61 22.92 wind 9 43200 > th dose independent sin 23 NA
65 22.92 temperature 20 270 > th dose independent rect. 14 19
66 22.92 wind 9 43200 > th dose dependent rect. 11 21
67 22.93 wind 9 43200 > th dose independent rect. 8 14
70 22.94 wind 9 43200 < th dose independent sin 23 NA
77 22.95 wind 9 43200 < th dose independent rect. 9 5
78 22.95 wind 9 43200 > th dose independent rect. 9 6
81 22.95 wind 9 43200 < th dose independent rect. 8 8
88 22.96 radiation 40 43200 > th dose independent rect. 11 1
94 22.96 wind 9 43200 < th dose independent rect. 8 16
97 22.96 wind 9 43200 > th dose independent rect. 9 22
100 22.96 wind 1 14400 < th dose dependent rect. 22 4
108 22.97 wind 9 43200 < th dose independent rect. 8 14
109 22.97 temperature 20 90 > th dose independent rect. 17 14
136 22.99 radiation 20 43200 > th dose independent rect. 9 1
151 22.99 wind 9 43200 < th dose independent rect. 9 22
170 23.00 wind 3 43200 < th dose dependent rect. 5 1
220 23.03 wind 9 43200 < th dose independent rect. 20 22
249 23.04 wind 9 43200 > th dose independent rect. 20 22
322 23.07 wind 9 43200 > th dose dependent sin 17 NA
345 23.08 humidity 90 14400 > th dose dependent rect. 2 10
347 23.09 wind 9 43200 < th dose independent no NA NA
365 23.10 wind 9 43200 > th dose independent no NA NA
420 23.14 wind 9 43200 > th dose independent rect. 10 3
430 23.14 wind 1 43200 > th dose dependent rect. 22 1
440 23.15 wind 9 43200 < th dose dependent rect. 22 1
456 23.16 wind 9 43200 > th dose independent rect. 17 23
460 23.16 wind 9 43200 > th dose dependent rect. 10 8
469 23.17 temperature 20 90 > th dose independent rect. 15 23
471 23.17 wind 9 43200 > th dose dependent rect. 10 12
473 23.17 wind 7 43200 > th dose dependent rect. 8 16
474 23.18 radiation 40 43200 > th dose independent rect. 11 3
481 23.18 temperature 20 90 < th dose independent rect. 9 20
485 23.18 wind 7 43200 > th dose dependent sin 23 NA
489 23.18 wind 7 43200 > th dose dependent rect. 8 10
492 23.18 wind 7 43200 > th dose dependent rect. 8 14
501 23.19 wind 9 43200 < th dose independent rect. 10 3
510 23.19 radiation 30 43200 > th dose dependent rect. 11 1
533 23.20 humidity 50 14400 > th dose dependent rect. 2 4
546 23.21 radiation 20 43200 < th dose independent rect. 13 1
547 23.21 radiation 30 43200 < th dose independent rect. 9 3
556 23.21 wind 7 43200 > th dose dependent rect. 10 4
572 23.22 humidity 60 43200 < th dose independent rect. 4 6
579 23.22 radiation 40 43200 < th dose dependent rect. 13 1
598 23.23 radiation 30 43200 < th dose independent rect. 9 1
628 23.24 radiation 40 43200 > th dose independent rect. 13 1
629 23.24 radiation 40 43200 < th dose independent rect. 11 1
634 23.24 humidity 60 43200 < th dose independent rect. 21 13
680 23.25 wind 7 43200 > th dose dependent rect. 20 22
711 23.26 wind 7 43200 > th dose dependent no NA NA
712 23.26 wind 9 43200 < th dose dependent rect. 5 1
713 23.26 radiation 1 4320 < th dose dependent rect. 7 2
755 23.28 humidity 60 43200 > th dose independent rect. 21 13
771 23.29 wind 3 43200 < th dose independent rect. 11 1
797 23.29 wind 7 43200 > th dose dependent rect. 15 23
808 23.30 wind 1 43200 > th dose dependent rect. 5 1
810 23.30 humidity 90 43200 < th dose dependent rect. 6 1
821 23.31 wind 3 43200 > th dose independent rect. 11 1
822 23.31 wind 3 43200 > th dose independent rect. 21 1
824 23.31 wind 3 43200 > th dose independent rect. 20 3
835 23.31 radiation 1 43200 > th dose dependent rect. 13 1
837 23.31 wind 1 43200 < th dose dependent rect. 5 3
850 23.32 wind 3 43200 < th dose independent rect. 21 1
853 23.32 radiation 1 4320 > th dose independent rect. 7 2
854 23.32 radiation 1 4320 < th dose independent rect. 7 2
863 23.32 humidity 70 43200 < th dose dependent rect. 7 2
872 23.33 wind 3 43200 < th dose independent rect. 20 3
879 23.33 humidity 60 43200 > th dose independent rect. 4 6
920 23.34 temperature 20 10 < th dose independent rect. 20 16
925 23.34 radiation 20 43200 > th dose dependent rect. 9 3
928 23.34 radiation 30 14400 < th dose dependent rect. 23 6
941 23.35 humidity 60 43200 < th dose independent rect. 8 1
952 23.35 temperature 20 30 < th dose independent rect. 18 18
969 23.36 wind 9 43200 > th dose independent sin 14 NA
970 23.36 temperature 20 30 > th dose independent sin 11 NA
971 23.36 wind 1 43200 > th dose independent rect. 24 2
997 23.37 wind 9 43200 < th dose independent sin 14 NA