BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0876300 Os01g0876300|AK061090
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0876300 Galactose oxidase, central domain containing p... 520 e-148
Os08g0529400 Cyclin-like F-box domain containing protein 178 4e-45
Os08g0529300 Cyclin-like F-box domain containing protein 164 7e-41
Os05g0172500 Cyclin-like F-box domain containing protein 85 6e-17
Os07g0535200 Cyclin-like F-box domain containing protein 83 2e-16
Os07g0535100 Cyclin-like F-box domain containing protein 83 2e-16
Os05g0172100 Galactose oxidase, central domain containing p... 75 7e-14
Os07g0535300 Cyclin-like F-box domain containing protein 70 1e-12
Os10g0381700 Cyclin-like F-box domain containing protein 70 2e-12
Os12g0634300 70 2e-12
>Os01g0876300 Galactose oxidase, central domain containing protein
Length = 269
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/269 (94%), Positives = 254/269 (94%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPPPRGKTLLSVLAFDP 60
MGFFPGHETSTIIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPPPRGKTLLSVLAFDP
Sbjct: 1 MGFFPGHETSTIIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPPPRGKTLLSVLAFDP 60
Query: 61 SASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDFGLDTDAMSATMHYFDGAIHVLA 120
SASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDFGLDTDAMSATMHYFDGAIHVLA
Sbjct: 61 SASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDFGLDTDAMSATMHYFDGAIHVLA 120
Query: 121 YSGHVVRIDLGTMACAVTALPAPVSCRARAGHCRGRLRYASSDGTRLKFWELKNAATSEW 180
YSGHVVRIDLGTMACAVTALPAPVSCRARAGHCRGRLRYASSDGTRLKFWELKNAATSEW
Sbjct: 121 YSGHVVRIDLGTMACAVTALPAPVSCRARAGHCRGRLRYASSDGTRLKFWELKNAATSEW 180
Query: 181 ALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYLWTPWKLVAFDMEKRRXXXXXX 240
ALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYLWTPWKLVAFDMEKRR
Sbjct: 181 ALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYLWTPWKLVAFDMEKRRVEEEWE 240
Query: 241 XXXXXXXXXAHLIQIWLFPFSRHLANSLA 269
AHLIQIWLFPFSRHLANSLA
Sbjct: 241 VGPEKEKEGAHLIQIWLFPFSRHLANSLA 269
>Os08g0529400 Cyclin-like F-box domain containing protein
Length = 369
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 153/289 (52%), Gaps = 28/289 (9%)
Query: 1 MGFFPGHETST-IIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPPPRGKTLLSVLAFD 59
M FFP ET+ ++D C G+LLY + A+A +V P TRRWA LP PR + L +LAFD
Sbjct: 76 MSFFPLAETAARVVDACEGLLLYRSLAAASAMYVACPATRRWAALPVPRREAQLPLLAFD 135
Query: 60 PS----ASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDF-GLDTDAMSATMHYFDG 114
P+ SP Y VVCF W RGA+V+VF SE GAW + + F G++ ++S T HY G
Sbjct: 136 PADGGGGSPRYHVVCFVAWQERGATVDVFSSETGAWAERDAAFGGVEASSLSPTTHYRGG 195
Query: 115 AIHVLAYSGHVVRIDLGTMACAVTA---------LPAPVSCRARAGHCRGRLRYASSDGT 165
+HVLAY VV +DL T+ LP V AR GH RGRL YA DG
Sbjct: 196 VLHVLAYPDRVVLMDLAATTTTTTSVAPGRLAPRLPDDVDAGARLGHSRGRLHYAKCDGE 255
Query: 166 RLKFWELKNAATS----EWALKHELGVNDLVAGEASGACQAVTFLFMAFHPDR-EMVYLW 220
RL+ W L A S +W L + + VN++ A V FL AFHPD ++VYL
Sbjct: 256 RLRVWALDVDAASPGSCQWILTNTVCVNEMTINGGLWAASEVKFL--AFHPDMADVVYLS 313
Query: 221 TP-WKLVAFDMEKRRXXXXXXXXXXXXXXXAHLIQIWLFPFSRHLANSL 268
+P K+ + DM ++ H+++ WL FS L + L
Sbjct: 314 SPEGKVASCDMRRKEMVSSWKLGAEH-----HVVRFWLLGFSSGLMSCL 357
>Os08g0529300 Cyclin-like F-box domain containing protein
Length = 371
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPPPRGKTLLSVLAFDP 60
+GF P + DGCNG+LL S F VV+P TRRWA LP P LSVLAFDP
Sbjct: 101 LGFLPERGGVVVCDGCNGLLLCR-SPGTPEFFVVDPVTRRWAALPAPAKAATLSVLAFDP 159
Query: 61 SASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDF-GLDTDAMSATMHYFDGAIHVL 119
S SP YRVV FTGW RGA+VEVF S AW + +F G+ ++S +MHY DG +++L
Sbjct: 160 STSPDYRVVNFTGWRDRGAAVEVFSSATWAWTARDTEFGGVPASSLSGSMHYHDGILYIL 219
Query: 120 AYSGH-VVRIDLGTMA--CAVTALPAPVS-CRARAGHCRGRLRYASSDGTRLKFWELKNA 175
A +V ++L + AV LP PV A H GRL Y DG LK WEL +
Sbjct: 220 ASEPDCLVSLNLADFSSTAAVIDLPEPVDGGDAHVAHSGGRLHYIFRDGELLKVWELDD- 278
Query: 176 ATSEWALKHELGVNDLVAGEASGACQAVTFLFMAFHPDRE-MVYLWTPWKLVAFDMEKRR 234
+W KH + V L G F+A HP+ E +VY W+PWK+V D+ ++
Sbjct: 279 -DDQWRPKHAVKVEHLAHGGGE-------VRFLAMHPEEEDVVYTWSPWKVVEHDLRRKT 330
Query: 235 XXXXXXXXXXXXXXXAHLIQIWLFPFSRHLANSLA 269
+++ WL P S +L++ LA
Sbjct: 331 TTCHCQAWEFGEGERNRVVKAWLVPSSCYLSDCLA 365
>Os05g0172500 Cyclin-like F-box domain containing protein
Length = 382
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQPAAAFH--VVNPTTRRWARLPP----PRGKTLLS 54
F P E +++D C G+LL + + AF V NP T W LP P+ + +
Sbjct: 102 FSFLPRFERISMVDSCGGLLLCQCFESSDAFRYVVFNPCTEEWIVLPESGFHPKDRGFCA 161
Query: 55 VLAFDPSASPHYRVVCFTGWLPRGASVEVFDSEGGAWRDHELDFGLDTDAMSATMHYF-D 113
L FDP S + V F V+++ SE W E ++ DT F +
Sbjct: 162 RLGFDPDVSSQFHVFEFVP-CDDVTGVKIYSSETREWNYRESEWCTDTGISDICRSAFCN 220
Query: 114 GAIHVLAYSGHVVRIDLGTMACAVTALPAPVSCR-------ARAGHCRGRLRYASSDGT- 165
G +H+++Y +V +D+ T +P G+L Y S T
Sbjct: 221 GMLHLVSYQRSIVSVDVEGRTWRTTKVPKMEGVEEVRDWLPGSICQSEGKLYYLSQYNTV 280
Query: 166 --RLKFWELKNAATSEWALKHELGVNDLVAGEASGACQAVTFLFMAF-HPDREMVYLWT- 221
L W L++ + EW LKH + N+L+ + + ++ F ++ H D ++Y T
Sbjct: 281 PISLSIWLLEDYSKDEWTLKHSV-TNELLYEKINSKYKSSEFCYVVIVHLDCNLIYYITR 339
Query: 222 PWKLVAFDMEKRR 234
+ L+A+DM+ +
Sbjct: 340 DYTLMAYDMDHKE 352
>Os07g0535200 Cyclin-like F-box domain containing protein
Length = 377
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 24/256 (9%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQPA--------AAFH--VVNPTTRRWARLPPP--- 47
F P +T +D CNG+LL QP FH V NP T+ W LP
Sbjct: 94 FSFLPQCDTVVPLDCCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKEWVMLPDADWA 153
Query: 48 RGKTLLSVLAFDPSASPHYRVVCFT-GWLPRGASVEVFDSEGGAWRDHELDFGLDT---D 103
G+T ++ L FDP+ S H+ V+ + VE++ SE G W H +G D
Sbjct: 154 NGETRIACLCFDPAISSHFHVLEYVEAEYEDVTGVEIYSSETGLWTLHVSGWGDDVFLRH 213
Query: 104 AMSATMHYFDGAIHVLAYSGHVVRIDLGTMACAVTALPAPVSCRARAGHCRGRL---RYA 160
+ + +G +H + + +D+ A+P P +GRL
Sbjct: 214 WANPRSVFLNGFLHSATCAAEIAVVDMEGKKWRTIAMPEPEGDTGIIHQTQGRLCAFNVD 273
Query: 161 SSDGTRLKFWELKNAATSEWALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYLW 220
D +L W L++ T W LKH + L G+ + + HP+ +++
Sbjct: 274 PDDIFKLSIWILEDYDTDNWILKHTVSSLRLFGGKKYQF--GFDYQIIVVHPECNLIFFV 331
Query: 221 TPWK--LVAFDMEKRR 234
W L+A++M+++
Sbjct: 332 YGWDKTLMAYEMDRKE 347
>Os07g0535100 Cyclin-like F-box domain containing protein
Length = 377
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 105/256 (41%), Gaps = 24/256 (9%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQPA--------AAFH--VVNPTTRRWARLPPP--- 47
F P +T +D CNG+LL QP FH V NP T+ W LP
Sbjct: 94 FSFLPQCDTVVPLDCCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKEWVMLPDADWA 153
Query: 48 RGKTLLSVLAFDPSASPHYRVVCFT-GWLPRGASVEVFDSEGGAWRDHELDFGLDT---D 103
G+T ++ L FDP+ S H+ V+ + VE++ SE G W H +G D
Sbjct: 154 NGETRIACLCFDPAISSHFHVLEYVEAEYEDVTGVEIYSSETGLWTLHVSGWGDDVFLRH 213
Query: 104 AMSATMHYFDGAIHVLAYSGHVVRIDLGTMACAVTALPAPVSCRARAGHCRGRL---RYA 160
+ + +G +H + + +D+ A+P P +GRL
Sbjct: 214 WANPRSVFLNGFLHSATCAAEIAVVDMEGKKWRTIAMPEPEGDTGIIHQTQGRLCAFNVD 273
Query: 161 SSDGTRLKFWELKNAATSEWALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYLW 220
D +L W L++ T W LKH + L G + +A HP+ +++
Sbjct: 274 PDDIFKLSIWILEDYDTDNWILKHTVSSLRLFGGMKYRF--GFDYQIIAVHPECNLIFFV 331
Query: 221 TPWK--LVAFDMEKRR 234
W L+A++M+++
Sbjct: 332 YGWDKTLMAYEMDRKE 347
>Os05g0172100 Galactose oxidase, central domain containing protein
Length = 389
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 29/253 (11%)
Query: 8 ETSTIIDGCNGMLLY--YASQPAAAFHVVNPTTRRWARLPPPRGK---TLLSVLAFDPSA 62
E ++D C G+LL+ + S + V NP+T W P + L FDP+
Sbjct: 110 EGMRMVDCCGGLLLFRCFMSSDEFCYLVCNPSTEEWVAFPDSGYNPEWQFFTHLGFDPAV 169
Query: 63 SPHYRVVCFT-GWLPRGASVEVFDSEGGAWRDHELDFGLDTDAMSATMHYFDGAIHVLAY 121
S H+ V F G VE++ SE G W E ++ +T T +F+G +H++
Sbjct: 170 SSHFHVFEFVMGDCGFVEGVEIYSSETGLWNFMESEWDPETTVYDRTRTFFNGMLHLVEE 229
Query: 122 SGHVVRIDLGTMACAVTALPAP-----------VSCRARAGHCRGRLRYASSDGT---RL 167
++ +D+ P P VSC G +G+L Y S+ T L
Sbjct: 230 GIAILSVDVEGEIWQSIGAPRPELENVEDMFALVSC--FIGQSQGKLCYLSAYDTVPWNL 287
Query: 168 KFWELKNAATSEWALKHELGVNDLVAGEASGAC-----QAVTFLFMAFHPDREMVYLWTP 222
W L++ + EW LKH+L L + + + C +A + +A H + ++Y
Sbjct: 288 SIWVLEDYSKDEWTLKHKLTTEQL-SEKINCKCKTDFDKAWYYHVVAVHSECNLIYYIAG 346
Query: 223 WK-LVAFDMEKRR 234
L+++DM ++
Sbjct: 347 GDTLMSYDMGHKQ 359
>Os07g0535300 Cyclin-like F-box domain containing protein
Length = 437
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 32/257 (12%)
Query: 1 MGFFPGHETSTIIDGCNGMLLYYASQ--PAAAFH--VVNPTTRRWARLPPPR---GKTLL 53
F P + +D CNG+LL Q + FH V NP T W LP G+ +
Sbjct: 160 FAFLPQCKEVIPLDSCNGLLLCRCLQFDGVSKFHYAVCNPATEEWVMLPDANWADGENRI 219
Query: 54 SVLAFDPSASPHYRVV--------CFTGWLPRGASVEVFDSEGGAWRDHELDFG---LDT 102
+ L FDP+ S H+ VV C TG VE+ S+ G W H + L +
Sbjct: 220 ACLCFDPAISSHFHVVEYVEDEAECVTG-------VEINSSKTGLWSVHVNGWNGVVLVS 272
Query: 103 DAMSATMHYFDGAIHVLAYSGHVVRIDLGTMACAVTALP---APVSCRARAGHCRGRLRY 159
+++ + +G +H + + +V +D+ +P + + C
Sbjct: 273 LSVNRRSVFLNGFLHSVTPADEIVAVDMEGKKWRKIPVPDRDNDIGIIHQTQGCLSAFNV 332
Query: 160 ASSDGTRLKFWELKNAATSEWALKHELGVNDLVAGEASGACQAVTFLFMAFHPDREMVYL 219
D +L W L++ T+ W LKH + DL G+ + +A HPD +++
Sbjct: 333 DLLDIFKLSIWFLEDYDTNNWILKHTVSSLDLFEGKNYRL--DFEYQVIAVHPDCNLIFF 390
Query: 220 WTPWK--LVAFDMEKRR 234
L+A++M+++
Sbjct: 391 VYGLDNTLMAYEMDRKE 407
>Os10g0381700 Cyclin-like F-box domain containing protein
Length = 408
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 90/241 (37%), Gaps = 69/241 (28%)
Query: 13 IDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPP-----PRGKTLLSV---------LAF 58
ID CNG+LL ++VNP TRRWARLPP P G L +V L F
Sbjct: 104 IDHCNGLLLMQE-------YIVNPATRRWARLPPTPEWSPAGSDLEAVVTDSCREEYLVF 156
Query: 59 DPSASPHYRVVCFT--------------------GWLPRGASVEVFDSEGGAWRDHELDF 98
DP+ SPHY V W P V+V+ S G W L
Sbjct: 157 DPTVSPHYEVFSIPELVFCRGDDKDNAESVVRQHEWPPSPFVVQVYSSATGRWEKRSLVR 216
Query: 99 GLDTDAMSATMH-------------YFDGAIHVLAYSGHVVRIDLGTMACAVTALPAPVS 145
+ A +H Y+ GA+HV + V+RI L V P+ ++
Sbjct: 217 RGEAAGTIADVHYSSWMASHHLYGVYWRGALHVQMKNNDVIRITLLDDKYQVIKSPSDIN 276
Query: 146 C---------RARAGHCRGRLRYASSDGTRLKFWELKN----AATSEWALKHELGVNDLV 192
R++ G C + RL+ W L EW L H++ + ++
Sbjct: 277 LNNHPYIYLGRSKKGVCCASI--DDKQHQRLQVWLLHEVLLGGGQMEWMLIHDVSLEQIM 334
Query: 193 A 193
A
Sbjct: 335 A 335
>Os12g0634300
Length = 462
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 84/209 (40%), Gaps = 52/209 (24%)
Query: 11 TIIDGCNGMLLYYASQPAAAFHVVNPTTRRWARLPP-----PRGKTLLS---VLAFDPSA 62
TI+D CNG++L HVVNP TR+W RLPP P +L L FDP+
Sbjct: 96 TIVDHCNGLIL-------LDHHVVNPATRQWTRLPPYPPESPGSDIILDGYHALVFDPAM 148
Query: 63 SPHYRVVCFT----------GWLPRGASVEVFDS----EGGAWRDHELDFGLDTDAMSAT 108
SPHY+V W P + VF S EG WR E F + +A T
Sbjct: 149 SPHYQVFLMPYVLRRATVSGQWPPSPLLLHVFSSRTEPEGSTWRWEERSFVREGNATMGT 208
Query: 109 MH----------------YFDGAIHVLAYSGHVVRIDLGTMACAVTALPAP------VSC 146
+ YF G+++V + V+RI + + LP ++
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFRGSLYVHCQNNCVIRITIANHRYRIIKLPGDFVGNQNITV 268
Query: 147 RARAGHCRGRLRYASSDG-TRLKFWELKN 174
G + + YA G RL+ W LK
Sbjct: 269 DPYLGKSQEGVYYALVIGLCRLQIWFLKE 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,094,191
Number of extensions: 432298
Number of successful extensions: 1511
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1495
Number of HSP's successfully gapped: 11
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)