Os08g0529400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0529400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.19	(0.0555)	R²	:	0.238
β₁	:	0.869	(0.2)	R²_dD	:	0.0329	R²_D	:	0.0376
β₂	:	1.46	(0.173)	R²_dC	:	0.193	R²_C	:	-0.0626
β₃	:	-1.8	(0.205)	R²_dE	:	0.217	R²_E	:	-0.0133
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.366	(0.12)	R²_dN8	:	0.0222	R²_N8	:	0.0465
σ	:	1.02
deviance	:	480.96
__

_____

C
peak time of C	:	8.81
E
wheather	:	temperature
threshold	:	20.16
memory length	:	343
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	1.25
open length of G	:	5.72

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
481.42	1.03	4.19	1.02	1.3	-1.66	-0.556	1.62	-0.341	8.91	20.1	293	1.88	5.1
481	1.02	4.19	0.833	1.46	-1.81	-0.187	--	-0.363	8.85	20.12	342	1.28	5.63
480.67	1.02	4.2	1.02	1.4	-1.69	--	1.2	-0.366	8.81	20.3	314	1.42	5.75
480.96	1.02	4.19	0.869	1.46	-1.8	--	--	-0.366	8.81	20.16	343	1.25	5.72
544.96	1.09	4.26	0.9	--	-0.78	--	1.03	-0.476	--	20.47	185	1.83	5.21
536.05	1.09	4.28	0.778	0.81	--	-0.0212	--	-0.597	12.5	--	--	--	--
536.05	1.08	4.28	0.778	0.81	--	--	--	-0.597	12.5	--	--	--	--
544.72	1.09	4.26	0.92	--	-0.733	--	--	-0.482	--	20.4	170	1.82	5.22
500.87	1.04	4.21	--	1.41	-1.69	--	--	-0.451	8.78	20.1	337	1.25	5.7
577.22	1.12	4.29	0.749	--	--	--	--	-0.611	--	--	--	--	--
551.99	1.1	4.3	--	0.799	--	--	--	-0.684	12.5	--	--	--	--
561.25	1.1	4.3	--	--	-0.699	--	--	-0.59	--	20.3	158	1.73	5.25
592.04	1.14	4.31	--	--	--	--	--	-0.694	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	483.17	temperature	20.0	270	> th	dose independent	rect.	2	5
2	484.15	temperature	20.0	270	> th	dose independent	rect.	1	7
6	486.74	temperature	20.0	270	> th	dose independent	rect.	1	20
10	488.76	temperature	20.0	270	> th	dose independent	rect.	2	15
15	490.71	temperature	20.0	270	> th	dose independent	rect.	13	18
34	493.67	temperature	15.0	270	> th	dose dependent	rect.	1	7
41	494.38	temperature	15.0	270	> th	dose dependent	rect.	2	5
54	496.03	temperature	10.0	270	> th	dose dependent	rect.	12	21
57	496.26	radiation	40.0	10	< th	dose independent	rect.	3	20
58	496.27	temperature	15.0	90	> th	dose dependent	rect.	14	20
67	497.00	temperature	15.0	10	> th	dose dependent	rect.	14	21
70	497.18	temperature	20.0	270	< th	dose dependent	rect.	3	20
94	498.01	temperature	10.0	270	> th	dose dependent	rect.	1	20
96	498.11	wind	5.0	4320	> th	dose independent	rect.	20	5
102	498.49	wind	5.0	4320	< th	dose independent	rect.	20	5
108	498.83	temperature	10.0	90	> th	dose dependent	rect.	3	19
115	498.98	atmosphere	1005.0	4320	> th	dose independent	rect.	21	1
139	499.88	wind	3.0	30	< th	dose dependent	rect.	3	11
147	500.15	temperature	10.0	30	> th	dose dependent	rect.	14	17
163	500.52	atmosphere	1015.0	270	< th	dose independent	rect.	13	18
166	500.59	temperature	20.0	720	> th	dose independent	rect.	17	14
168	500.68	humidity	60.0	30	> th	dose dependent	rect.	3	8
176	500.82	atmosphere	1005.0	4320	< th	dose independent	rect.	21	1
177	500.86	temperature	20.0	720	> th	dose independent	rect.	19	12
193	501.07	wind	3.0	30	< th	dose dependent	rect.	3	16
198	501.17	temperature	10.0	90	> th	dose dependent	rect.	14	9
213	501.32	temperature	20.0	270	< th	dose dependent	rect.	4	4
239	501.74	wind	3.0	90	> th	dose independent	rect.	7	7
248	501.83	radiation	40.0	10	< th	dose independent	rect.	3	16
253	501.89	radiation	20.0	90	< th	dose independent	rect.	3	8
254	501.89	wind	1.0	30	> th	dose independent	rect.	23	15
259	501.93	temperature	20.0	270	< th	dose independent	rect.	3	20
260	501.95	humidity	70.0	270	> th	dose dependent	rect.	1	7
264	502.00	temperature	20.0	720	< th	dose independent	rect.	17	13
269	502.08	atmosphere	1005.0	4320	> th	dose independent	rect.	20	5
270	502.08	radiation	20.0	270	< th	dose independent	rect.	1	8
276	502.15	radiation	20.0	10	< th	dose independent	rect.	3	6
295	502.33	humidity	90.0	270	> th	dose independent	rect.	3	1
313	502.57	radiation	40.0	90	< th	dose dependent	rect.	3	8
315	502.58	temperature	15.0	30	> th	dose dependent	rect.	3	4
316	502.59	radiation	40.0	90	< th	dose independent	rect.	3	8
325	502.65	temperature	10.0	10	> th	dose dependent	rect.	14	9
328	502.71	wind	3.0	30	< th	dose dependent	rect.	3	7
343	502.83	radiation	10.0	43200	< th	dose dependent	rect.	23	5
356	502.96	humidity	90.0	270	> th	dose independent	rect.	1	5
358	502.96	wind	3.0	30	< th	dose dependent	rect.	3	19
371	503.04	radiation	20.0	90	< th	dose independent	rect.	3	6
373	503.04	temperature	20.0	270	< th	dose dependent	sin	8	NA
379	503.09	wind	5.0	4320	> th	dose dependent	rect.	20	6
380	503.12	temperature	20.0	720	> th	dose independent	rect.	19	20
383	503.17	temperature	20.0	720	> th	dose independent	sin	13	NA
421	503.34	temperature	20.0	720	> th	dose independent	rect.	17	22
422	503.34	atmosphere	1015.0	270	< th	dose dependent	rect.	13	18
430	503.41	wind	1.0	270	> th	dose independent	rect.	9	16
436	503.44	atmosphere	1015.0	270	< th	dose independent	rect.	12	21
454	503.57	temperature	15.0	270	> th	dose dependent	rect.	3	1
459	503.61	temperature	20.0	270	< th	dose dependent	rect.	4	2
474	503.69	atmosphere	1005.0	4320	< th	dose independent	rect.	20	5
489	503.80	humidity	50.0	270	> th	dose independent	rect.	7	6
504	503.86	wind	1.0	270	> th	dose independent	rect.	7	18
518	503.90	humidity	80.0	90	> th	dose independent	rect.	3	6
523	503.92	humidity	80.0	270	> th	dose dependent	rect.	3	1
528	503.93	radiation	40.0	10	< th	dose dependent	rect.	3	20
533	503.96	humidity	80.0	10	> th	dose independent	rect.	3	7
536	503.96	atmosphere	995.0	90	> th	dose dependent	rect.	22	5
542	504.01	temperature	20.0	720	< th	dose independent	sin	12	NA
547	504.06	humidity	80.0	10	> th	dose independent	rect.	3	5
549	504.07	radiation	30.0	270	< th	dose dependent	rect.	1	8
569	504.16	wind	3.0	30	< th	dose dependent	rect.	3	4
592	504.28	radiation	40.0	10	< th	dose dependent	rect.	3	8
598	504.32	wind	5.0	4320	< th	dose independent	rect.	20	1
605	504.34	atmosphere	1015.0	270	< th	dose dependent	rect.	12	21
638	504.48	temperature	20.0	270	< th	dose dependent	rect.	18	17
666	504.57	temperature	20.0	270	< th	dose dependent	rect.	20	14
680	504.63	atmosphere	1015.0	10	< th	dose dependent	rect.	14	20
705	504.73	atmosphere	995.0	30	> th	dose independent	rect.	7	20
706	504.74	temperature	10.0	270	> th	dose independent	rect.	7	6
707	504.74	atmosphere	995.0	270	> th	dose independent	rect.	7	6
708	504.74	atmosphere	1015.0	270	< th	dose independent	rect.	7	6
709	504.74	temperature	10.0	270	> th	dose independent	rect.	13	18
744	504.86	atmosphere	995.0	270	> th	dose dependent	rect.	22	2
776	504.94	precipitation	0.1	270	< th	dose independent	rect.	7	6
777	504.94	precipitation	0.1	270	< th	dose dependent	rect.	7	6
849	505.12	wind	1.0	90	> th	dose dependent	rect.	7	7
850	505.13	wind	3.0	90	> th	dose independent	rect.	9	5
876	505.20	temperature	20.0	720	> th	dose independent	no	NA	NA
877	505.20	wind	9.0	270	< th	dose independent	rect.	13	18
879	505.20	precipitation	0.1	270	< th	dose independent	rect.	13	18
882	505.20	precipitation	0.1	270	< th	dose dependent	rect.	13	18
888	505.22	atmosphere	995.0	270	> th	dose dependent	rect.	19	7
891	505.23	humidity	90.0	270	< th	dose independent	rect.	22	15
907	505.27	temperature	20.0	270	< th	dose dependent	no	NA	NA
935	505.34	radiation	1.0	90	< th	dose dependent	rect.	17	10
957	505.41	radiation	40.0	90	< th	dose independent	rect.	13	22
972	505.47	wind	3.0	90	< th	dose independent	rect.	3	10
980	505.49	wind	9.0	270	< th	dose independent	rect.	7	6