Os01g0876300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os01g0876300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 671.14 | 1.22 | 7.07 | -4.8 | 1.38 | -1.21 | -0.465 | -7.77 | -1.7 | 7.24 | 1006 | 7217 | -- | -- |
| 723.76 | 1.25 | 7.06 | -4.3 | 1.52 | -1.86 | -0.169 | -- | -1.81 | 7.11 | 1006 | 10059 | -- | -- |
| 671.56 | 1.21 | 7.07 | -4.8 | 1.38 | -1.19 | -- | -7.71 | -1.7 | 7.14 | 1006 | 7277 | -- | -- |
| 721.97 | 1.25 | 7 | -4.23 | 1.46 | -1.96 | -- | -- | -1.73 | 7.01 | 1006 | 9988 | -- | -- |
| 772.08 | 1.29 | 7.1 | -4.79 | -- | -1.19 | -- | -7.57 | -1.68 | -- | 1006 | 7406 | -- | -- |
| 802.08 | 1.33 | 6.95 | -4.54 | 1.38 | -- | -0.532 | -- | -1.51 | 7.28 | -- | -- | -- | -- |
| 802.73 | 1.33 | 6.95 | -4.56 | 1.38 | -- | -- | -- | -1.51 | 7.16 | -- | -- | -- | -- |
| 819.24 | 1.34 | 7.05 | -4.38 | -- | -2.16 | -- | -- | -1.78 | -- | 1006 | 9988 | -- | -- |
| 917.11 | 1.41 | 6.94 | -- | 1.26 | -4.03 | -- | -- | -0.569 | 6.92 | 1070 | 47520 | -- | -- |
| 903.7 | 1.4 | 6.98 | -4.53 | -- | -- | -- | -- | -1.48 | -- | -- | -- | -- | -- |
| 1350.14 | 1.72 | 6.84 | -- | 1.34 | -- | -- | -- | -1 | 7.38 | -- | -- | -- | -- |
| 994.84 | 1.47 | 6.72 | -- | -- | -4.04 | -- | -- | -0.299 | -- | 1077 | 47520 | -- | -- |
| 1445.39 | 1.77 | 6.87 | -- | -- | -- | -- | -- | -0.982 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 658.11 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 2 | 658.17 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 3 | 659.68 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 116 | 677.43 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 4 | NA |
| 137 | 678.76 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 20 |
| 147 | 679.35 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 4 | NA |
| 166 | 680.17 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 8 |
| 206 | 682.28 | atmosphere | 1010 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 237 | 683.01 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 267 | 683.46 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 272 | 683.55 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 275 | 683.58 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 319 | 684.30 | humidity | 90 | 270 | < th | dose independent | rect. | 24 | 15 |
| 333 | 684.51 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 3 | 18 |
| 433 | 685.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 449 | 686.18 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 19 |
| 507 | 686.91 | atmosphere | 1005 | 4320 | < th | dose independent | no | NA | NA |
| 552 | 687.57 | atmosphere | 1005 | 4320 | > th | dose independent | no | NA | NA |
| 609 | 688.51 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 706 | 690.16 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 712 | 690.24 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 20 |
| 749 | 690.90 | atmosphere | 1010 | 4320 | < th | dose dependent | sin | 5 | NA |
| 776 | 691.19 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 4 | 15 |
| 844 | 692.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 856 | 692.43 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 867 | 692.59 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 955 | 693.64 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 20 | 20 |