BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0876300 Os01g0876300|AK061090
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07610.1  | chr5:2406068-2407330 FORWARD LENGTH=421             59   3e-09

>AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421
          Length = 420

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 31/220 (14%)

Query: 4   FPGHETSTII-DGCNGMLLYYASQPAAA-----FHVVNPTTRRWARLPPPRGKTLLSVLA 57
           F  H+T  II    NG+LL   S  ++      ++V NPTT+++  L    G   LS LA
Sbjct: 117 FTDHQTDMIIMQSTNGLLLCKCSCASSNHFNTNYYVYNPTTKQYTLLHQIAGHIALS-LA 175

Query: 58  FDPSASPHYRVVCFTGWLPRGAS---------VEVFDSEGGAWRD-HELDFGLDTDAMSA 107
           FDPS SPHY+V C  G      S         +EV+ S  G WR    +     T    +
Sbjct: 176 FDPSRSPHYKVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFS 235

Query: 108 TMHYFDGAIHVLAYSGH-VVRIDLGTMACAVTALP------APV---SCRARAGHCRGRL 157
              +++GA++   +S    +  D+ T    +  LP       P+            +G L
Sbjct: 236 YSVFWNGAVNWYGFSSRDCLSFDINTQEIKILPLPDHEHEDEPLPDPRILMFLDESQGNL 295

Query: 158 RYA---SSDGTRLKFWELKNAATSEWALKHELGVNDLVAG 194
            Y    +   + L+ +E+++ ++S W++K+ + +  L A 
Sbjct: 296 YYIEVNNQSSSNLRVYEMESNSSS-WSVKYNVDLEPLAAA 334



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,932,008
Number of extensions: 233746
Number of successful extensions: 643
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)