BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0736400 Os01g0736400|AK100689
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0736400 Aminotransferase, class I and II domain contai... 746 0.0
Os10g0560900 Aminotransferase, class I and II domain contai... 653 0.0
Os01g0928700 Similar to Serine palmitoyltransferase 112 4e-25
Os11g0516000 Similar to Serine palmitoyltransferase (Fragment) 112 4e-25
Os01g0928800 Similar to Serine palmitoyltransferase 110 2e-24
AK107303 103 2e-22
Os10g0189600 Aminotransferase, class I and II domain contai... 77 2e-14
Os03g0252800 Aminotransferase, class I and II domain contai... 74 1e-13
Os02g0806900 Aminotransferase, class I and II domain contai... 74 2e-13
>Os01g0736400 Aminotransferase, class I and II domain containing protein
Length = 362
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 LHGPQLPSGNPQGCSEAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGF 60
LHGPQLPSGNPQGCSEAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGF
Sbjct: 1 LHGPQLPSGNPQGCSEAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGF 60
Query: 61 SANMAVMTALGSVSSILSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYK 120
SANMAVMTALGSVSSILSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYK
Sbjct: 61 SANMAVMTALGSVSSILSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYK 120
Query: 121 HCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLV 180
HCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLV
Sbjct: 121 HCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLV 180
Query: 181 CGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALP 240
CGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALP
Sbjct: 181 CGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALP 240
Query: 241 VPVVASVYAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRH 300
VPVVASVYAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRH
Sbjct: 241 VPVVASVYAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRH 300
Query: 301 MLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMAS 360
MLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMAS
Sbjct: 301 MLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMAS 360
Query: 361 KL 362
KL
Sbjct: 361 KL 362
>Os10g0560900 Aminotransferase, class I and II domain containing protein
Length = 450
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/356 (88%), Positives = 334/356 (93%)
Query: 7 PSGNPQGCSEAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAV 66
P+ A+EYGMGPRGSALICGYTTYHK+VEESLAELKKKEDCLLCPTGFSANMAV
Sbjct: 95 PAIRHAAVKAAEEYGMGPRGSALICGYTTYHKMVEESLAELKKKEDCLLCPTGFSANMAV 154
Query: 67 MTALGSVSSILSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHH 126
MTALG++SS+L+ GRKPAE ERIA+FSDALNHASIIDGIRLVERQQEVV+FVYKHCDM H
Sbjct: 155 MTALGNISSLLAAGRKPAEDERIAIFSDALNHASIIDGIRLVERQQEVVSFVYKHCDMSH 214
Query: 127 LDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGG 186
L+ LLSSCS+EKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGG
Sbjct: 215 LELLLSSCSMEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGG 274
Query: 187 GAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVAS 246
GAPELF CEN+IDISVGTLSKAAGCQGGFI CS RWKRLIQSRGRSFIFSTALPVPVVAS
Sbjct: 275 GAPELFECENEIDISVGTLSKAAGCQGGFIACSTRWKRLIQSRGRSFIFSTALPVPVVAS 334
Query: 247 VYAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRHMLRSGF 306
VYAAL+VS++ERWRRSVIWRHVQYFASLTKL++TSPIISIVVGSE+AALRAGR MLRSGF
Sbjct: 335 VYAALYVSREERWRRSVIWRHVQYFASLTKLNITSPIISIVVGSEKAALRAGRDMLRSGF 394
Query: 307 HVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMASKL 362
HVTPIRPPTVP NSCRLRITLSASHS DDIKRLVDAL+PWLP KHD Q Y +ASKL
Sbjct: 395 HVTPIRPPTVPPNSCRLRITLSASHSSDDIKRLVDALTPWLPHKHDIQIYAVASKL 450
>Os01g0928700 Similar to Serine palmitoyltransferase
Length = 497
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 165/356 (46%), Gaps = 50/356 (14%)
Query: 32 GYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSILSVGRKPAEGERIAV 91
G T H +EE +A K +L G+ N A++ AL G+ +
Sbjct: 151 GNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPAL--------------IGKGGLI 196
Query: 92 FSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLL----------SSCSIEKKVV 141
SD+LNH SI++G R V++H + HL+ +L + +K +V
Sbjct: 197 ISDSLNHNSIVNG----ARGSGASVQVFQHNNPAHLEEVLREQIAGGQPRTHRRWKKIIV 252
Query: 142 VTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCE-NDIDI 200
+ + ++SM+G+ LPE+V + +KY +D+AH G+ G G EL G + D+DI
Sbjct: 253 IVEGIYSMEGELCKLPEIVAVCKKYKAYTYLDEAHSIGAVGKTGRGVCELLGVDPADVDI 312
Query: 201 SVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVYAALHV------S 254
+GT +K+ G GG+I S ++ + I++T++ P V V +A+ V S
Sbjct: 313 MMGTFTKSFGSCGGYIAASKEIIDHLKHICPAHIYATSMSPPAVQQVISAIEVILGEDGS 372
Query: 255 KKERWRRSVIWRHVQYFAS-LTKL------DLTSPIISIVVGSEEAALRAGRHMLRSGFH 307
+ + + I + +F S L K+ D SP++ I++ + R LR
Sbjct: 373 DRGAKKLAQIRENSNFFRSELEKMGFEVLGDNDSPVMPIMLYNPAKMPAFSRECLRQKVA 432
Query: 308 VTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALS--------PWLPDKHDEQT 355
+ + P P R RI +SASHS +D+ + ++ +S +LP +H++ T
Sbjct: 433 IVTVSFPATPLLLARARICISASHSREDLIKGLEVISKVGDLVGIKYLPVEHEKTT 488
>Os11g0516000 Similar to Serine palmitoyltransferase (Fragment)
Length = 488
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 157/337 (46%), Gaps = 42/337 (12%)
Query: 32 GYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSILSVGRKPAEGERIAV 91
G T H +EE +A K +L G+ N A++ L G+ +
Sbjct: 143 GTTKLHTELEELVARFVGKPAAILFGMGYVTNSAIIPCL--------------VGKGGLI 188
Query: 92 FSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLL----------SSCSIEKKVV 141
SD+LNH SI++G R V++H HL+ +L + +K +V
Sbjct: 189 ISDSLNHNSIVNG----ARGSGATVRVFQHNSPAHLEEVLREQIAGGQPRTHRPWKKIIV 244
Query: 142 VTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCE-NDIDI 200
+ + ++SM+G+ LPE++ + +KY +D+AH G++G G EL G + D+DI
Sbjct: 245 IVEGIYSMEGELCKLPEIIAVCKKYKAYTYLDEAHSIGAVGQSGRGVCELLGVDPADVDI 304
Query: 201 SVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVYAALHV------S 254
+GT +K+ G GG+I S + ++ + I++T++ P V V +A+ V S
Sbjct: 305 MMGTFTKSFGSCGGYIAASKEIIQHLKLSCPAHIYATSMSPPAVQQVISAIKVILGEDGS 364
Query: 255 KKERWRRSVIWRHVQYFAS-LTKL------DLTSPIISIVVGSEEAALRAGRHMLRSGFH 307
+ + + I + +F S L K+ D SP++ I++ + R LR
Sbjct: 365 NRGAQKLARIRENSNFFRSELKKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQKVA 424
Query: 308 VTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALS 344
V + P P R RI +SASH+ +D+ + +D +S
Sbjct: 425 VVTVAFPATPLLLARARICISASHTREDLIKALDVIS 461
>Os01g0928800 Similar to Serine palmitoyltransferase
Length = 489
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 164/358 (45%), Gaps = 50/358 (13%)
Query: 32 GYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSILSVGRKPAEGERIAV 91
G T H +EE +A K +L G+ N A++ AL G+ +
Sbjct: 143 GNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPAL--------------VGKGGLI 188
Query: 92 FSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLL----------SSCSIEKKVV 141
SD+LNH SI++G R V++H + HL+ +L + +K +V
Sbjct: 189 ISDSLNHNSIVNG----ARGSGATVRVFQHNNPAHLEEVLREQIAGGQPRTHRPWKKIIV 244
Query: 142 VTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCE-NDIDI 200
+ + ++SM+G+ LPE++ + +KY +D+AH G+ G G EL G + D+DI
Sbjct: 245 IVEGIYSMEGELCKLPEVIAVCKKYKAYTYLDEAHSIGAVGKTGRGVCELLGVDPADVDI 304
Query: 201 SVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVYAALHV------S 254
+GT +K+ G GG+I S ++ + I++T++ P V V +A+ V S
Sbjct: 305 MMGTFTKSFGSCGGYIAASKEIIDHLKHICPAHIYATSMSPPAVQQVISAIKVILGEDGS 364
Query: 255 KKERWRRSVIWRHVQYFAS-LTKL------DLTSPIISIVVGSEEAALRAGRHMLRSGFH 307
+ + + I + +F S L K+ D SP++ I++ + R LR
Sbjct: 365 NRGAKKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQHVA 424
Query: 308 VTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALS--------PWLPDKHDEQTYV 357
V + P P R RI +SASHS +D+ + ++ +S + P +H++ V
Sbjct: 425 VVTVAFPATPLLLARARICISASHSREDLIKGLEVISKVGDLVGIKYFPVEHEKTASV 482
>AK107303
Length = 477
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 168/400 (42%), Gaps = 85/400 (21%)
Query: 22 MGPRGSALICGYTTYHKLVEESLAE-LKKKEDCLLCPTGFSANMAVMTALGSVSSILSVG 80
+G GS L+ G ++ H+ +E+ L E LL +G+ AN+++++ L +
Sbjct: 77 LGSAGSRLLDGNSSAHEAIEDDLTRHFASSEAGLLFNSGYEANVSLLSTLPQPKDV---- 132
Query: 81 RKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLS-------- 132
V D L HAS+ DG+R R + ++H + HL +LS
Sbjct: 133 ----------VIYDELVHASVHDGLRR-SRVPAHLRIPFRHNSVDHLRDILSRLRQDGTL 181
Query: 133 -----SCSIEKKVV--VTDSLFSMDGDFAPLPELVKLRRKY----GFLLVIDDAHGTLVC 181
+ E++ V +S++SMDGD PL L+ ++ V+D+AH T V
Sbjct: 182 TAGTSAAPGEQRNVWLAVESIYSMDGDACPLRALLDTLSQHVPQHRICAVVDEAHSTAVY 241
Query: 182 GENGGGAPELFGCENDIDIS--VGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTAL 239
G G G G ++D I+ + T KA G G ++CS + + + R IFSTAL
Sbjct: 242 GSRGRGLVNALGLQDDPRITARLMTFGKAWGASGAIVLCSKIARHYLINYARPLIFSTAL 301
Query: 240 PVPVVASVYAALHV----SKKERWRRSV------------IWRHVQYFASLT-------- 275
P +AS+ AA S ++R R + + R A T
Sbjct: 302 GYPQLASILAAFRSVQDGSAEKRARATFGNARRLVDGLEGVIRSQSPAAKRTIALPPHLK 361
Query: 276 ------------------KLDLTSPIISIVVGSEEAALRAGRHMLRSGFHVTPIRPPTVP 317
+ SPI+ ++ A H+ +G PI PTVP
Sbjct: 362 PKQQAQLAVVADDDFVRWSMQQPSPIVPVLTSR---ARELAAHLRANGLLARPICYPTVP 418
Query: 318 QNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYV 357
+ R+RI + A ++ DI RL+D++ W+ HD+ ++
Sbjct: 419 KGEDRVRICVHADNTTSDIDRLIDSVQSWV---HDDSGHI 455
>Os10g0189600 Aminotransferase, class I and II domain containing protein
Length = 482
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 53/357 (14%)
Query: 18 QEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSIL 77
++YG+G G G H E +A +D +L G S +V+ A I
Sbjct: 140 EKYGVGSCGPRSFYGTIDVHLDCESKIANFLGTQDSILYSYGISTIFSVIPAFCKKGDI- 198
Query: 78 SVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCS-- 135
+ +D H ++ +G++L + VV F KH DM L +L +
Sbjct: 199 -------------IVADEGVHWAVQNGLQL--SRSTVVYF--KHNDMASLASILEKLTHG 241
Query: 136 ---IEK--KVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPE 190
EK + +V ++++ G APL E+V+L+ KY F ++++++H V G++G G E
Sbjct: 242 NKHTEKIRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGKSGRGLAE 301
Query: 191 LFGCE-NDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVAS--V 247
+G IDI + A GGF S R + ++FS +LP P +AS +
Sbjct: 302 HYGVPVEKIDIITAGMGNALATDGGFCTGSVRVVDHQRLSSSGYVFSASLP-PYLASAAM 360
Query: 248 YAALHVSKK----ERWRRSVIWRHVQYFASLTKLDLTSPIISIVV--------GSEEAAL 295
A H+ + R ++ H + + + L++ S I+S +V GS A L
Sbjct: 361 SAVNHLEENPSVLANLRSNIALLH-KELSDIPGLEIASNILSPIVFLKLKTPTGSAVADL 419
Query: 296 R-----AGRHMLRSGFHVTPIRPPTVPQNSCRL----RITLSASHSLDDIKRLVDAL 343
A + ++ + + ++ + CRL R+ +SA H+ DI ++ +L
Sbjct: 420 ELLEIIAEKVLMEDSVFIAATKRSSL--DKCRLPVGIRLFVSAGHTESDIFKVSASL 474
>Os03g0252800 Aminotransferase, class I and II domain containing protein
Length = 485
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 153/358 (42%), Gaps = 55/358 (15%)
Query: 18 QEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSIL 77
++YG+G G G H E +A+ D +L G S +V+ A I
Sbjct: 139 EKYGVGSCGPRGFYGTIDVHLDCEAKIAKFLGTPDSILYSYGISTIFSVIPAFCKKGDI- 197
Query: 78 SVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCS-- 135
+ +D H ++ +G+ L + VV F KH DM L L +
Sbjct: 198 -------------IVADEGVHWAVQNGLHL--SRSTVVYF--KHNDMASLANTLEKLTRG 240
Query: 136 ---IEK--KVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPE 190
EK + +V +S++ G APL E+V+L+ KY F ++++++H V G++G G E
Sbjct: 241 NKRAEKIRRYIVVESIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGQSGRGLAE 300
Query: 191 LFGCEND-IDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASV-- 247
+G D IDI + A GGF S R + ++FS +LP P +AS
Sbjct: 301 HYGVPIDKIDIITAGMGNALATDGGFCTGSVRVVDHQRLSSSGYVFSASLP-PYLASAAV 359
Query: 248 ----YAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVV--------GSEEAAL 295
Y + S R ++ + H + + L+++S ++S +V GS +
Sbjct: 360 SAVSYLEGNPSVLADLRSNISFLHKE-LSGTPGLEISSHVLSPIVFLKLKKSTGSSNTDI 418
Query: 296 ----RAGRHMLR--SGFHVTPIRPPTVPQNSCRL----RITLSASHSLDDIKRLVDAL 343
+L+ S F V R P + C+L R+ +SA H+ DI ++ +L
Sbjct: 419 DLLETIAERVLKEDSVFIVASKRSPL---DRCKLPVGIRLFMSAGHTDSDISKVSSSL 473
>Os02g0806900 Aminotransferase, class I and II domain containing protein
Length = 481
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 53/357 (14%)
Query: 18 QEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSIL 77
++YG+G G G H E +A+ +D +L G S +V+ A I
Sbjct: 139 EKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTQDSILYSYGISTIFSVIPAFCKKGDI- 197
Query: 78 SVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCS-- 135
+ +D H ++ +G++L + VV F KH DM L L +
Sbjct: 198 -------------IVADEGVHWAVQNGLQL--SRSTVVYF--KHNDMASLASTLEKLTHG 240
Query: 136 ---IEK--KVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPE 190
EK + +V ++++ G APL E+V+L+ KY F ++++++H V G++G G E
Sbjct: 241 NKRTEKIRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGKSGRGLAE 300
Query: 191 LFGCE-NDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVAS--V 247
+G IDI + A GGF S R + ++FS +LP P +AS +
Sbjct: 301 HYGVPIEKIDIITAGMGNALATDGGFCTGSIRVVDHQRLSSSGYVFSASLP-PYLASAAI 359
Query: 248 YAALHVSKK----ERWRRSVIWRHVQYFASLTKLDLTSPIISIVV--------GSEEAAL 295
A H+ + R ++ H + + + L++ S I+S +V GS A L
Sbjct: 360 SAVDHLEENPSVLANLRSNITLLH-KELSDVQGLEIASNILSPIVFLKLKTSTGSAVADL 418
Query: 296 R-----AGRHMLRSGFHVTPIRPPTVPQNSCRL----RITLSASHSLDDIKRLVDAL 343
+ + + + + ++ + CRL R+ +SA H+ DI ++ ++L
Sbjct: 419 ELLEVISEKVLKEDSVFIAATKRSSL--DKCRLPVGIRLFVSAGHTESDILKVSESL 473
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,338,187
Number of extensions: 577446
Number of successful extensions: 1419
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)