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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0806900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminotransferase, class I and II domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0484) R2 : 0.0249
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.348 (0.102) R2dN8 : 0.0321 R2N8 : 0.0249
σ : 0.912
deviance : 382.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
351.74 0.881 3.77 -0.749 0.071 0.208 -1.76 -2.62 -0.576 5.76 20.5 651 -- --
362.69 0.894 3.7 -0.297 0.0684 0.768 -1.36 -- -0.447 3.44 18.7 310 -- --
358.41 0.882 3.77 -0.727 0.113 0.232 -- -2.5 -0.544 6.82 20.6 710 -- --
368.3 0.9 3.69 -0.267 0.0892 0.748 -- -- -0.437 6.31 18.7 310 -- --
358.8 0.882 3.76 -0.715 -- 0.235 -- -2.36 -0.559 -- 20.51 714 -- --
376.34 0.909 3.68 -0.109 0.00726 -- 1.36 -- -0.365 15.7 -- -- -- --
381.04 0.914 3.67 -0.0877 0.12 -- -- -- -0.358 9.83 -- -- -- --
368.71 0.898 3.69 -0.264 -- 0.744 -- -- -0.435 -- 18.71 298 -- --
370.06 0.901 3.68 -- 0.0851 0.678 -- -- -0.402 6.87 18.7 310 -- --
381.9 0.913 3.68 -0.089 -- -- -- -- -0.358 -- -- -- -- --
381.24 0.913 3.67 -- 0.12 -- -- -- -0.348 9.88 -- -- -- --
370.44 0.899 3.69 -- -- 0.679 -- -- -0.4 -- 18.71 298 -- --
382.11 0.912 3.67 -- -- -- -- -- -0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 341.79 wind 3 43200 < th dose dependent rect. 6 1
3 344.53 radiation 1 1440 < th dose independent rect. 11 1
4 344.53 radiation 1 1440 < th dose dependent rect. 11 1
7 346.22 radiation 1 1440 > th dose independent rect. 12 3
9 346.57 wind 3 43200 < th dose independent rect. 6 1
10 346.59 radiation 1 1440 > th dose independent rect. 10 5
11 346.78 wind 3 43200 > th dose independent rect. 6 1
13 347.05 radiation 1 1440 < th dose independent rect. 13 2
14 347.05 radiation 1 1440 < th dose dependent rect. 13 2
15 347.11 humidity 90 14400 > th dose dependent rect. 9 1
18 347.38 radiation 1 1440 < th dose independent rect. 10 5
19 347.38 radiation 1 1440 < th dose dependent rect. 10 5
21 347.54 wind 1 43200 > th dose independent rect. 21 16
24 347.56 wind 1 43200 < th dose dependent rect. 4 23
28 347.73 humidity 90 14400 > th dose independent rect. 9 1
33 347.76 wind 3 14400 < th dose independent rect. 3 2
37 347.81 wind 1 43200 > th dose independent rect. 5 7
41 347.89 wind 3 14400 > th dose independent rect. 3 2
52 348.16 wind 1 43200 < th dose independent rect. 19 18
57 348.30 humidity 60 14400 > th dose independent rect. 15 1
73 348.64 wind 9 14400 < th dose independent rect. 6 5
76 348.70 wind 1 43200 < th dose independent rect. 21 16
86 348.96 wind 1 43200 < th dose dependent rect. 21 21
87 348.98 wind 1 43200 < th dose independent rect. 17 20
104 349.12 wind 1 43200 < th dose dependent rect. 19 23
126 349.46 wind 3 43200 < th dose dependent rect. 21 11
152 349.70 wind 1 43200 < th dose dependent rect. 15 23
181 349.98 wind 1 43200 < th dose independent rect. 10 23
183 350.00 humidity 60 14400 < th dose independent rect. 15 1
184 350.01 humidity 90 14400 < th dose independent rect. 8 2
187 350.01 wind 1 43200 < th dose dependent no NA NA
189 350.02 wind 1 43200 > th dose independent rect. 11 22
201 350.09 wind 1 43200 < th dose dependent rect. 9 23
212 350.21 wind 1 43200 > th dose dependent rect. 6 1
215 350.25 wind 1 43200 < th dose dependent rect. 24 23
232 350.48 atmosphere 1005 720 > th dose independent rect. 16 11
236 350.51 wind 1 43200 < th dose independent rect. 5 23
262 350.70 wind 1 43200 < th dose independent rect. 3 23
289 350.92 wind 3 43200 < th dose dependent sin 8 NA
291 350.93 wind 1 43200 < th dose independent rect. 5 8
293 350.94 wind 1 43200 < th dose dependent rect. 7 23
323 351.15 wind 5 14400 < th dose dependent rect. 3 2
325 351.16 atmosphere 1005 10 < th dose dependent rect. 24 9
334 351.22 wind 1 43200 < th dose independent rect. 8 23
339 351.26 humidity 90 14400 > th dose dependent rect. 18 2
347 351.31 wind 1 43200 < th dose dependent rect. 19 19
354 351.35 wind 1 43200 < th dose independent no NA NA
364 351.40 wind 1 43200 < th dose dependent rect. 11 23
383 351.53 humidity 90 14400 > th dose dependent rect. 7 10
387 351.56 humidity 90 14400 > th dose dependent rect. 7 13
389 351.57 wind 9 14400 < th dose independent rect. 10 1
417 351.71 temperature 20 720 > th dose independent rect. 4 2
426 351.79 wind 3 43200 < th dose dependent rect. 1 1
451 351.87 atmosphere 1005 720 < th dose independent rect. 20 1
462 351.94 humidity 60 14400 > th dose independent rect. 15 17
463 351.94 temperature 20 720 > th dose independent rect. 12 19
467 351.96 wind 3 14400 < th dose dependent rect. 24 5
490 352.07 wind 1 14400 > th dose dependent rect. 3 3
502 352.12 wind 1 43200 < th dose independent rect. 24 23
524 352.22 wind 1 43200 > th dose independent rect. 22 23
529 352.23 wind 1 43200 > th dose independent rect. 3 23
543 352.30 humidity 60 14400 > th dose independent rect. 15 11
544 352.30 humidity 60 14400 > th dose independent rect. 15 13
551 352.31 atmosphere 1005 270 < th dose independent rect. 16 16
555 352.32 humidity 60 14400 > th dose independent rect. 15 7
573 352.38 humidity 90 14400 > th dose dependent rect. 16 1
585 352.41 wind 1 43200 > th dose independent no NA NA
600 352.48 atmosphere 1005 270 > th dose independent sin 12 NA
615 352.51 wind 1 43200 > th dose independent sin 4 NA
618 352.51 wind 1 14400 > th dose dependent rect. 3 5
626 352.54 atmosphere 1005 720 < th dose independent rect. 19 6
645 352.62 wind 3 43200 < th dose independent rect. 19 13
646 352.62 humidity 90 14400 > th dose independent rect. 7 13
658 352.66 wind 1 43200 > th dose independent rect. 24 23
667 352.69 humidity 60 14400 < th dose independent rect. 15 18
697 352.76 humidity 90 14400 > th dose independent rect. 7 15
746 352.88 wind 9 14400 > th dose independent rect. 7 4
752 352.90 atmosphere 1005 720 < th dose independent rect. 18 9
759 352.93 wind 9 14400 > th dose independent rect. 10 1
766 352.95 wind 1 43200 > th dose independent rect. 5 23
780 352.98 atmosphere 1005 10 < th dose dependent rect. 6 2
812 353.09 wind 1 43200 > th dose independent rect. 8 23
826 353.12 humidity 60 14400 < th dose independent rect. 15 7
834 353.12 wind 3 43200 > th dose independent rect. 18 14
859 353.17 humidity 70 14400 < th dose independent rect. 17 1
884 353.23 humidity 90 14400 > th dose dependent sin 22 NA
895 353.26 humidity 90 14400 < th dose independent rect. 7 11
896 353.26 temperature 20 720 > th dose independent rect. 21 19
947 353.38 humidity 90 14400 < th dose independent rect. 7 13