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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0928700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine palmitoyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0164) R2 : 0.0129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0843 (0.0345) R2dN8 : 0.0167 R2N8 : 0.0129
σ : 0.308
deviance : 43.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.35 0.302 2.99 0.0262 0.0276 -0.204 -0.215 1.19 0.0799 2.91 1 16 -- --
42.42 0.306 2.98 0.0738 0.037 -0.113 -0.348 -- 0.093 3.16 1 16 -- --
41.49 0.3 2.99 0.0331 0.0352 -0.194 -- 1.26 0.0845 4.64 1.094 16 -- --
42.78 0.307 2.97 0.0821 0.0477 -0.102 -- -- 0.0947 5.2 1 16 -- --
41.54 0.3 2.99 0.0269 -- -0.222 -- 1.3 0.0808 -- 1.083 16 -- --
42.82 0.307 2.98 0.088 0.074 -- -0.327 -- 0.0912 3.66 -- -- -- --
43.11 0.307 2.97 0.0933 0.0779 -- -- -- 0.093 4.8 -- -- -- --
42.89 0.306 2.98 0.0813 -- -0.123 -- -- 0.0961 -- 1.1 16 -- --
42.96 0.307 2.98 -- 0.0469 -0.11 -- -- 0.0858 5.18 1.1 16 -- --
43.43 0.308 2.98 0.0962 -- -- -- -- 0.095 -- -- -- -- --
43.34 0.308 2.98 -- 0.0796 -- -- -- 0.0826 4.76 -- -- -- --
43.06 0.307 2.98 -- -- -0.13 -- -- 0.0872 -- 1.1 16 -- --
43.68 0.308 2.98 -- -- -- -- -- 0.0843 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.20 temperature 20.0 30 > th dose dependent rect. 2 1
2 35.26 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 35.27 temperature 20.0 30 > th dose independent rect. 2 1
5 35.28 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 35.33 wind 3.0 30 < th dose dependent rect. 2 1
11 35.34 wind 3.0 30 < th dose independent rect. 2 1
18 35.39 temperature 10.0 30 > th dose independent rect. 2 1
20 35.39 temperature 30.0 30 < th dose independent rect. 2 1
21 35.39 humidity 50.0 30 > th dose independent rect. 2 1
25 35.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 35.39 radiation 1.0 30 < th dose independent rect. 2 1
32 35.39 precipitation 0.1 30 < th dose independent rect. 2 1
33 35.39 temperature 10.0 30 > th dose independent rect. 3 23
34 35.39 humidity 50.0 30 > th dose dependent rect. 2 1
36 35.39 radiation 1.0 30 < th dose dependent rect. 2 1
41 35.39 precipitation 0.1 30 < th dose dependent rect. 2 1
49 35.62 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 35.74 temperature 30.0 30 < th dose dependent rect. 2 1
53 35.86 wind 1.0 30 > th dose independent rect. 2 1
67 36.35 radiation 10.0 14400 < th dose dependent rect. 3 1
76 36.37 wind 9.0 1440 < th dose independent rect. 3 1
77 36.37 temperature 10.0 1440 > th dose independent rect. 3 1
80 36.37 temperature 30.0 1440 < th dose independent rect. 3 1
85 36.37 humidity 50.0 1440 > th dose independent rect. 3 1
94 36.37 atmosphere 995.0 1440 > th dose independent rect. 3 1
95 36.37 radiation 1.0 1440 < th dose independent rect. 3 1
115 36.37 temperature 10.0 1440 > th dose independent rect. 4 23
118 36.37 radiation 1.0 1440 < th dose dependent rect. 3 1
159 36.64 wind 9.0 30 < th dose independent rect. 3 23
160 36.73 temperature 25.0 90 > th dose dependent rect. 1 3
162 36.83 temperature 25.0 90 > th dose independent rect. 1 3
168 37.22 atmosphere 995.0 30 > th dose independent rect. 3 23
170 37.27 precipitation 0.1 30 < th dose independent rect. 3 23
171 37.27 precipitation 0.1 30 < th dose dependent rect. 3 23
199 38.61 atmosphere 1005.0 10 > th dose dependent rect. 2 3
225 39.19 temperature 25.0 90 > th dose independent rect. 4 1
232 39.27 humidity 50.0 30 > th dose independent rect. 3 23
238 39.41 temperature 25.0 90 > th dose dependent rect. 4 1
282 39.70 humidity 90.0 10 < th dose independent rect. 4 1
285 39.74 wind 1.0 30 > th dose dependent rect. 4 1
292 39.81 temperature 30.0 30 < th dose independent rect. 3 23
307 39.98 wind 3.0 30 < th dose dependent rect. 2 3
331 40.22 humidity 90.0 90 < th dose independent rect. 2 1
345 40.36 atmosphere 1005.0 10 > th dose independent rect. 2 3
368 40.50 temperature 25.0 1440 < th dose independent rect. 1 1
377 40.58 wind 1.0 10 > th dose independent rect. 21 23
385 40.62 atmosphere 1015.0 30 < th dose independent rect. 3 23
406 40.72 wind 1.0 10 < th dose independent rect. 14 13
422 40.74 temperature 10.0 30 > th dose dependent rect. 3 23
437 40.83 wind 9.0 30 < th dose dependent rect. 3 23
460 40.91 wind 1.0 30 > th dose independent rect. 4 1
461 40.91 temperature 20.0 10 > th dose independent rect. 2 3
488 40.97 atmosphere 1000.0 10 > th dose independent rect. 5 21
527 41.04 wind 9.0 720 < th dose dependent rect. 2 1
535 41.05 wind 1.0 30 > th dose independent rect. 3 23
561 41.06 temperature 10.0 30 > th dose dependent rect. 5 21
562 41.07 wind 9.0 30 < th dose independent rect. 5 21
580 41.10 atmosphere 1000.0 10 > th dose independent rect. 14 12
581 41.10 precipitation 0.1 30 < th dose independent rect. 5 21
583 41.10 precipitation 0.1 30 < th dose dependent rect. 5 21
587 41.11 temperature 10.0 10 > th dose independent rect. 2 3
591 41.11 temperature 30.0 10 < th dose independent rect. 2 3
593 41.11 humidity 50.0 10 > th dose independent rect. 2 3
602 41.11 atmosphere 1010.0 10 < th dose independent rect. 2 3
606 41.11 radiation 1.0 10 < th dose independent rect. 2 3
616 41.11 radiation 40.0 30 < th dose independent rect. 14 12
618 41.11 temperature 10.0 10 > th dose independent rect. 5 21
621 41.11 radiation 1.0 10 < th dose dependent rect. 2 3
639 41.12 radiation 1.0 10 < th dose dependent rect. 2 12
642 41.13 temperature 30.0 10 < th dose independent rect. 2 12
647 41.14 wind 1.0 10 > th dose independent rect. 5 23
648 41.14 precipitation 0.1 720 < th dose independent rect. 3 23
651 41.14 precipitation 0.1 720 < th dose dependent rect. 3 23
666 41.16 temperature 20.0 30 > th dose dependent rect. 20 9
673 41.17 radiation 1.0 10 < th dose independent rect. 2 12
679 41.18 temperature 25.0 270 < th dose independent rect. 20 11
686 41.18 radiation 1.0 10 < th dose dependent rect. 2 10
689 41.19 wind 9.0 10 < th dose independent rect. 14 12
690 41.19 temperature 10.0 10 > th dose independent rect. 2 12
692 41.19 temperature 10.0 10 > th dose independent rect. 14 12
693 41.19 atmosphere 995.0 10 > th dose independent rect. 2 12
694 41.19 atmosphere 1015.0 10 < th dose independent rect. 2 12
702 41.20 precipitation 0.1 10 < th dose independent rect. 2 12
710 41.20 precipitation 0.1 10 < th dose dependent rect. 2 12
715 41.21 wind 9.0 1440 < th dose independent rect. 3 3
716 41.21 temperature 10.0 1440 > th dose independent rect. 3 3
719 41.21 temperature 30.0 1440 < th dose independent rect. 3 3
723 41.21 humidity 50.0 1440 > th dose independent rect. 3 3
733 41.21 atmosphere 995.0 1440 > th dose independent rect. 3 3
734 41.21 radiation 20.0 1440 < th dose independent rect. 3 3
745 41.21 precipitation 0.1 10 < th dose independent rect. 14 12
746 41.21 temperature 10.0 1440 > th dose independent rect. 6 21
749 41.21 radiation 10.0 10 < th dose independent rect. 5 21
752 41.21 precipitation 0.1 10 < th dose dependent rect. 14 12
753 41.21 temperature 10.0 90 > th dose dependent rect. 5 14
754 41.22 atmosphere 995.0 720 > th dose independent rect. 14 1
794 41.23 radiation 1.0 10 < th dose independent rect. 2 10
796 41.23 atmosphere 995.0 720 > th dose independent rect. 3 23
804 41.24 precipitation 0.1 720 < th dose independent rect. 14 1
814 41.24 precipitation 0.1 720 < th dose dependent rect. 14 1
815 41.24 temperature 25.0 720 > th dose dependent rect. 5 3
821 41.25 radiation 1.0 10 < th dose independent rect. 2 6
833 41.26 humidity 50.0 10 > th dose independent rect. 14 12
837 41.26 radiation 10.0 10 < th dose independent rect. 3 23
838 41.26 humidity 80.0 4320 < th dose dependent rect. 1 1
842 41.26 radiation 40.0 10 < th dose dependent rect. 14 12
845 41.27 temperature 10.0 720 > th dose independent rect. 14 1
851 41.27 atmosphere 1015.0 720 < th dose independent rect. 14 1
860 41.27 humidity 50.0 30 > th dose independent rect. 2 12
866 41.27 temperature 10.0 720 > th dose independent rect. 15 23
867 41.27 atmosphere 995.0 720 > th dose independent rect. 15 23
873 41.28 wind 1.0 720 > th dose independent rect. 14 1
874 41.28 wind 3.0 720 < th dose independent rect. 2 1
878 41.28 temperature 10.0 1440 > th dose independent rect. 3 12
881 41.28 temperature 10.0 1440 > th dose independent rect. 15 12
889 41.28 humidity 50.0 10 > th dose dependent rect. 2 3
892 41.29 wind 1.0 10 > th dose independent sin 15 NA
906 41.30 precipitation 0.1 720 < th dose independent rect. 2 1
908 41.30 wind 9.0 720 < th dose independent rect. 15 6
909 41.30 atmosphere 1000.0 720 > th dose independent rect. 3 6
912 41.30 precipitation 0.1 720 < th dose independent rect. 21 18
914 41.30 precipitation 0.1 720 < th dose dependent rect. 2 1
920 41.30 precipitation 0.1 720 < th dose dependent rect. 21 18
933 41.31 temperature 10.0 10 > th dose dependent rect. 5 15
934 41.32 wind 1.0 10 > th dose independent sin 7 NA
943 41.32 atmosphere 1000.0 10 > th dose independent rect. 16 10
949 41.33 wind 9.0 720 < th dose independent rect. 14 1
955 41.33 precipitation 0.1 720 < th dose independent rect. 3 6
957 41.33 temperature 30.0 10 < th dose independent rect. 14 12
959 41.33 humidity 50.0 30 > th dose independent rect. 5 21
966 41.33 precipitation 0.1 720 < th dose dependent rect. 3 6
974 41.34 temperature 25.0 270 < th dose independent sin 11 NA
978 41.34 precipitation 0.1 720 < th dose independent rect. 23 16
980 41.34 precipitation 0.1 720 < th dose dependent rect. 23 16
1000 41.36 wind 9.0 10 < th dose independent rect. 16 10