Os03g0252800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class I and II domain containing protein.
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Os03g0252800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class I and II domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.14 | 0.226 | 10.8 | 0.26 | 0.624 | -0.361 | -0.00722 | 0.424 | 0.412 | 22.7 | 12.32 | 1397 | -- | -- |
| 23.48 | 0.226 | 10.8 | 0.225 | 0.631 | -0.356 | 0.0403 | -- | 0.409 | 22.6 | 12.32 | 1379 | -- | -- |
| 23.12 | 0.224 | 10.8 | 0.255 | 0.627 | -0.364 | -- | 0.426 | 0.413 | 22.7 | 12.32 | 1379 | -- | -- |
| 23.48 | 0.226 | 10.8 | 0.218 | 0.627 | -0.354 | -- | -- | 0.406 | 22.7 | 12.31 | 1383 | -- | -- |
| 31.14 | 0.261 | 10.8 | 0.115 | -- | -0.395 | -- | 0.124 | 0.308 | -- | 2.116 | 1633 | -- | -- |
| 27.33 | 0.245 | 10.8 | 0.103 | 0.589 | -- | -0.0251 | -- | 0.287 | 22.6 | -- | -- | -- | -- |
| 27.33 | 0.245 | 10.8 | 0.104 | 0.589 | -- | -- | -- | 0.288 | 22.6 | -- | -- | -- | -- |
| 31.24 | 0.261 | 10.8 | 0.115 | -- | -0.394 | -- | -- | 0.308 | -- | 2.116 | 1633 | -- | -- |
| 24.4 | 0.23 | 10.8 | -- | 0.621 | -0.283 | -- | -- | 0.343 | 22.8 | 16.17 | 1358 | -- | -- |
| 48.68 | 0.326 | 10.8 | 0.115 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 27.62 | 0.246 | 10.8 | -- | 0.59 | -- | -- | -- | 0.276 | 22.6 | -- | -- | -- | -- |
| 31.59 | 0.263 | 10.8 | -- | -- | -0.394 | -- | -- | 0.295 | -- | 2.116 | 1633 | -- | -- |
| 49.03 | 0.327 | 10.8 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 2 | 22.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 3 | 22.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 4 | 22.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 16 | 22.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 17 | 22.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 23 | 22.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 34 | 22.77 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 17 |
| 53 | 22.80 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 54 | 22.80 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 78 | 22.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 79 | 22.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 107 | 22.92 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 127 | 22.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 143 | 22.98 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 13 |
| 146 | 23.00 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 11 |
| 178 | 23.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 195 | 23.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 208 | 23.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 228 | 23.13 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 255 | 23.21 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 341 | 23.27 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 342 | 23.27 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 376 | 23.29 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 417 | 23.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 465 | 23.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 478 | 23.38 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 487 | 23.39 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 586 | 23.40 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 640 | 23.44 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 664 | 23.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 771 | 23.49 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 801 | 23.50 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 839 | 23.52 | radiation | 1 | 720 | < th | dose independent | sin | 18 | NA |
| 890 | 23.54 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 915 | 23.56 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 10 |