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Os10g0189600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminotransferase, class I and II domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.63 (0.0209) R2 : 0.566
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.3 (0.0534) R2dC : 0.566 R2C : 0.565
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0261 (0.044) R2dN8 : 0.000432 R2N8 : -0.000855
σ : 0.395
deviance : 71.2
__
_____
C
peak time of C : 3.97
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.41 0.353 9.6 0.576 0.71 -1.33 -0.454 0.931 0.0788 10.4 0.7097 297 -- --
58.09 0.355 9.58 0.497 0.638 -1.33 0.338 -- 0.0808 10.5 0.7104 327 -- --
56.63 0.35 9.61 0.559 0.652 -1.31 -- 0.78 0.0845 10.4 0.6903 311 -- --
58.46 0.356 9.59 0.523 0.629 -1.3 -- -- 0.0759 10.5 0.7 323 -- --
60.74 0.363 9.57 0.565 -- -1.29 -- 0.843 0.141 -- 0.7154 498 -- --
65.5 0.379 9.62 0.433 1.3 -- -0.463 -- 0.0202 3.97 -- -- -- --
66.12 0.381 9.62 0.439 1.29 -- -- -- 0.0228 3.98 -- -- -- --
61.86 0.366 9.61 0.533 -- -1.29 -- -- 0.0809 -- 0.7047 498 -- --
66.14 0.379 9.61 -- 0.594 -1.28 -- -- 0.0145 10.4 0.7692 328 -- --
157.53 0.586 9.62 0.492 -- -- -- -- 0.0573 -- -- -- -- --
71.2 0.395 9.63 -- 1.3 -- -- -- -0.0261 3.97 -- -- -- --
69.35 0.388 9.62 -- -- -1.27 -- -- 0.0265 -- 0.7793 498 -- --
163.9 0.598 9.63 -- -- -- -- -- 0.00272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.14 humidity 80 90 > th dose dependent rect. 5 13
3 55.33 radiation 1 270 > th dose independent rect. 6 13
13 55.37 humidity 80 30 > th dose independent rect. 5 16
15 55.47 humidity 80 30 > th dose independent rect. 5 13
20 55.72 humidity 70 30 > th dose dependent rect. 5 16
22 55.77 humidity 80 90 < th dose independent rect. 8 11
24 55.79 humidity 90 10 < th dose dependent rect. 8 12
32 55.95 humidity 90 10 < th dose dependent rect. 8 17
33 55.97 radiation 1 270 < th dose dependent sin 1 NA
39 56.06 humidity 80 90 > th dose independent sin 0 NA
43 56.08 humidity 80 90 > th dose dependent sin 0 NA
49 56.16 humidity 80 30 < th dose independent sin 0 NA
56 56.20 humidity 50 90 > th dose dependent rect. 9 23
63 56.28 humidity 90 10 < th dose dependent rect. 8 21
83 56.48 radiation 1 270 < th dose independent sin 1 NA
98 56.55 humidity 70 10 > th dose dependent sin 23 NA
109 56.59 temperature 15 30 > th dose dependent rect. 8 21
146 56.80 humidity 80 30 < th dose independent rect. 8 4
160 56.83 humidity 60 10 > th dose dependent rect. 5 23
186 56.95 radiation 1 270 < th dose dependent rect. 5 12
190 56.97 radiation 1 270 > th dose independent rect. 18 23
193 56.98 radiation 1 270 > th dose independent sin 1 NA
207 57.01 humidity 90 90 < th dose dependent rect. 15 23
216 57.04 humidity 60 90 > th dose dependent no NA NA
217 57.05 radiation 1 270 < th dose independent rect. 22 23
256 57.14 humidity 60 90 > th dose dependent rect. 17 23
262 57.16 humidity 60 90 > th dose dependent rect. 19 23
279 57.20 radiation 1 270 < th dose dependent rect. 22 23
285 57.22 radiation 1 1440 > th dose independent rect. 10 2
290 57.22 humidity 90 90 < th dose dependent rect. 13 23
293 57.23 humidity 70 90 > th dose dependent rect. 22 23
304 57.26 humidity 90 90 < th dose dependent rect. 21 22
308 57.27 temperature 10 90 > th dose dependent rect. 6 23
310 57.28 humidity 60 10 > th dose dependent rect. 17 23
318 57.29 humidity 50 90 > th dose dependent rect. 11 23
327 57.31 humidity 90 10 < th dose dependent rect. 23 21
340 57.35 humidity 90 10 < th dose dependent rect. 4 16
342 57.35 humidity 90 10 < th dose dependent rect. 15 23
358 57.39 humidity 50 90 > th dose dependent rect. 11 21
359 57.40 radiation 1 270 > th dose independent rect. 15 23
360 57.40 humidity 90 10 < th dose dependent sin 0 NA
414 57.45 humidity 90 10 < th dose dependent rect. 13 23
422 57.46 humidity 90 10 < th dose dependent rect. 4 21
438 57.49 radiation 1 720 < th dose independent rect. 4 17
439 57.49 radiation 1 720 < th dose independent rect. 6 17
451 57.50 humidity 50 10 > th dose dependent rect. 11 23
467 57.54 radiation 1 720 < th dose dependent rect. 6 17
473 57.55 radiation 1 720 < th dose dependent rect. 4 17
486 57.56 humidity 60 90 > th dose dependent rect. 14 23
543 57.64 radiation 1 270 < th dose independent rect. 5 12
556 57.66 humidity 90 270 < th dose independent rect. 7 2
571 57.68 radiation 1 720 < th dose dependent rect. 3 20
585 57.70 radiation 1 720 < th dose independent rect. 3 20
588 57.70 humidity 90 90 < th dose dependent no NA NA
621 57.74 humidity 90 10 < th dose dependent no NA NA
633 57.76 radiation 1 720 < th dose independent rect. 6 15
642 57.77 radiation 1 270 > th dose independent no NA NA
643 57.77 radiation 1 270 < th dose independent no NA NA
734 57.81 humidity 60 90 > th dose dependent rect. 1 23
738 57.82 humidity 90 10 < th dose dependent rect. 8 4
749 57.83 humidity 90 10 < th dose dependent rect. 15 21
759 57.84 radiation 1 720 < th dose dependent rect. 1 23
760 57.85 radiation 1 1440 > th dose independent rect. 15 3
773 57.86 radiation 1 270 < th dose independent rect. 12 23
791 57.88 radiation 1 1440 < th dose independent rect. 15 3
797 57.88 radiation 1 270 < th dose independent rect. 17 23
798 57.88 temperature 25 90 < th dose dependent rect. 3 16
816 57.90 humidity 80 90 > th dose independent rect. 22 23
870 57.95 temperature 25 90 < th dose dependent rect. 3 18
908 58.00 temperature 25 90 < th dose dependent rect. 1 20
914 58.01 radiation 1 720 < th dose independent rect. 1 22
918 58.01 temperature 30 30 < th dose dependent rect. 5 16
927 58.02 radiation 1 720 > th dose independent rect. 15 20
953 58.05 radiation 1 1440 < th dose independent rect. 10 2
958 58.05 humidity 80 30 > th dose independent rect. 5 23
960 58.05 radiation 1 1440 < th dose dependent rect. 10 2
973 58.07 radiation 1 1440 < th dose independent rect. 15 7
983 58.07 humidity 80 90 > th dose dependent rect. 7 12