BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0713800 Os01g0713800|J065109H03
(132 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0713800 Dilute domain containing protein 272 4e-74
Os05g0537300 Similar to Unconventional myosin heavy chain 218 9e-58
Os06g0488200 Similar to Myosin heavy chain (Fragment) 195 9e-51
Os10g0395100 Dilute domain containing protein 172 9e-44
Os02g0816900 Similar to Myosin 168 9e-43
Os10g0339400 IQ calmodulin-binding region domain containing... 161 1e-40
Os02g0777700 Similar to Myosin XI B 125 8e-30
Os03g0860700 Similar to Myosin XI B 118 1e-27
Os03g0747900 Similar to Myosin heavy chain class XI E1 protein 118 1e-27
>Os01g0713800 Dilute domain containing protein
Length = 132
Score = 272 bits (696), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD
Sbjct: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD
Sbjct: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
Query: 121 INGSNAISAEVR 132
INGSNAISAEVR
Sbjct: 121 INGSNAISAEVR 132
>Os05g0537300 Similar to Unconventional myosin heavy chain
Length = 359
Score = 218 bits (555), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 116/130 (89%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
L +LRANHVPSIL+HKL TQIFS+++VQLFNRLLLRRECCSFSNGEY++ GL ++KHW +
Sbjct: 161 LHLLRANHVPSILIHKLLTQIFSMVNVQLFNRLLLRRECCSFSNGEYIRAGLTQIKHWCN 220
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
+ +EFA SAW+AL+HIRQAVDFLVISLKP+RT EI DVCPALS+QQLERIV MYWDD
Sbjct: 221 DVNQEFADSAWEALRHIRQAVDFLVISLKPIRTWSEICDDVCPALSLQQLERIVGMYWDD 280
Query: 121 INGSNAISAE 130
+NG+N ISAE
Sbjct: 281 MNGTNIISAE 290
>Os06g0488200 Similar to Myosin heavy chain (Fragment)
Length = 1529
Score = 195 bits (495), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 106/131 (80%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
L++L+ N+VP LV K+FTQIFS I+VQLFN LLLRRECCSFSNGEYVK GLAEL+HW
Sbjct: 1332 LNMLKLNNVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCY 1391
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
AT E+AGSAWD LKHIRQA+ FLVI KP +TL EI D+CP LSIQQL RI +MYWDD
Sbjct: 1392 RATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDD 1451
Query: 121 INGSNAISAEV 131
G++++S EV
Sbjct: 1452 KYGTHSVSPEV 1462
>Os10g0395100 Dilute domain containing protein
Length = 481
Score = 172 bits (435), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 104/131 (79%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
+D L N VPS + KL TQ+FS I+VQLFN LLLRRECC+FSNGEYVK GL L+ W
Sbjct: 278 MDRLHKNFVPSFFIRKLVTQVFSFINVQLFNSLLLRRECCTFSNGEYVKTGLCVLEKWIL 337
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
+AT E AG+AWD LK+IR+AV+FL+I+ K RTL++I+ ++CPALS++Q+ R+ +MYWDD
Sbjct: 338 DATEEHAGAAWDELKYIREAVEFLIIAQKSKRTLEQIKKNICPALSVRQIYRLCTMYWDD 397
Query: 121 INGSNAISAEV 131
G++++SAEV
Sbjct: 398 KYGTHSVSAEV 408
>Os02g0816900 Similar to Myosin
Length = 1510
Score = 168 bits (426), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 97/131 (74%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
L L+ NHVP +L K+FTQIFS I+VQLFN LLLRRECCSFSNGEYVK GLAEL+ W
Sbjct: 1316 LKKLQDNHVPPVLAQKVFTQIFSYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCA 1375
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
AT E+A ++WD LKHIRQAV FLVI K + EI D+CP LS+QQL RI + YWDD
Sbjct: 1376 KATTEYAAASWDELKHIRQAVGFLVIFQKFRISYDEIVNDLCPILSVQQLYRICTQYWDD 1435
Query: 121 INGSNAISAEV 131
+ ++S++V
Sbjct: 1436 KYNTQSVSSDV 1446
>Os10g0339400 IQ calmodulin-binding region domain containing protein
Length = 729
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 96/131 (73%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
+D L N+VPS + KL TQ+FS I++QLFN LLLRRECC+FSNGEYVK GL+ L+ W
Sbjct: 528 MDTLHENYVPSFFIRKLITQLFSFINIQLFNSLLLRRECCTFSNGEYVKAGLSLLEKWIT 587
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDD 120
+AT EFAG++ L +IRQAV FLVI K + L+EIR ++CP LS++Q+ RI SMYWDD
Sbjct: 588 DATDEFAGTSMHELNYIRQAVGFLVIHQKRKKKLEEIRNELCPNLSVRQIYRICSMYWDD 647
Query: 121 INGSNAISAEV 131
+ IS EV
Sbjct: 648 KYNTQGISNEV 658
>Os02g0777700 Similar to Myosin XI B
Length = 1494
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 19/125 (15%)
Query: 7 NHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSDNATREF 66
N VPS + KL TQ+FS I++QLFN LLLRRECC+FSNGEYVK GL+ L+ W +AT E
Sbjct: 1312 NIVPSFFIRKLITQLFSFINIQLFNSLLLRRECCTFSNGEYVKAGLSLLEKWISDATDE- 1370
Query: 67 AGSAWDALKHIRQAVDFLVISLKPMRTLKEIRTDVCPALSIQQLERIVSMYWDDINGSNA 126
VI K +TL+EIR D+CP LS++Q+ RI SMYWDD +
Sbjct: 1371 ------------------VIHQKRKKTLEEIRQDLCPNLSVRQIYRICSMYWDDKYNTQG 1412
Query: 127 ISAEV 131
IS EV
Sbjct: 1413 ISNEV 1417
>Os03g0860700 Similar to Myosin XI B
Length = 1457
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
L L+ N VPSI K+FTQIFS I+ QLFN LL+RRECCSFSNGEYVK GL EL+ W
Sbjct: 1262 LKTLQENCVPSIFARKIFTQIFSFINAQLFNSLLVRRECCSFSNGEYVKQGLQELEAWCT 1321
Query: 61 NATREFAGSAWDALKHIRQAVDFLVISLKPMR-TLKEIRTDVCPALSIQQLERIVSMYWD 119
A E + L + K R + EI D+C ALS+QQL +I + YWD
Sbjct: 1322 QAKPE------------SYLTETLTVIFKKFRISYDEIINDLCTALSVQQLYKICTQYWD 1369
Query: 120 DINGSNAISAEV 131
D + ++S EV
Sbjct: 1370 DKYNTESVSEEV 1381
>Os03g0747900 Similar to Myosin heavy chain class XI E1 protein
Length = 1454
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 1 LDVLRANHVPSILVHKLFTQIFSLIDVQLFNRLLLRRECCSFSNGEYVKVGLAELKHWSD 60
L+ + NHVP +++ K F Q F+ ++VQLFN LLLRRECCSFSNGE++K GL EL+ W
Sbjct: 1358 LETMNNNHVPPMIIRKTFNQAFAFMNVQLFNSLLLRRECCSFSNGEFLKAGLQELEQWCS 1417
Query: 61 NATREFAGSAWDALKHIRQAVDFLV 85
T E+AG++WD +HIRQAV FLV
Sbjct: 1418 VTTEEYAGTSWDEFQHIRQAVGFLV 1442
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,847,855
Number of extensions: 130719
Number of successful extensions: 350
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 9
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)