Os02g0816900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin.
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Os02g0816900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.59 | 0.35 | 10.9 | -0.897 | 1.17 | 0.419 | -0.94 | 0.9 | -0.127 | 10.8 | 31.19 | 1068 | -- | -- |
| 55.77 | 0.348 | 11 | -1 | 1.15 | 0.477 | -0.878 | -- | -0.143 | 10.7 | 31.1 | 1106 | -- | -- |
| 59.25 | 0.358 | 10.9 | -0.899 | 1.18 | 0.412 | -- | 1.18 | -0.125 | 10.8 | 31.1 | 1067 | -- | -- |
| 59.31 | 0.359 | 11 | -1.07 | 1.19 | 0.54 | -- | -- | -0.124 | 10.8 | 31.01 | 1067 | -- | -- |
| 141.28 | 0.554 | 10.9 | -0.417 | -- | -0.0883 | -- | 3.48 | -0.165 | -- | 29.8 | 1377 | -- | -- |
| 67.59 | 0.385 | 11 | -0.906 | 1.1 | -- | -1.08 | -- | -0.217 | 10.6 | -- | -- | -- | -- |
| 72.42 | 0.399 | 11 | -0.95 | 1.1 | -- | -- | -- | -0.22 | 10.7 | -- | -- | -- | -- |
| 126.93 | 0.525 | 11 | -1.13 | -- | 0.537 | -- | -- | -0.349 | -- | 33.91 | 7378 | -- | -- |
| 88.71 | 0.439 | 10.9 | -- | 1.16 | 0.398 | -- | -- | -0.0365 | 10.8 | 32.33 | 1059 | -- | -- |
| 147.1 | 0.567 | 11 | -0.971 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 96.18 | 0.459 | 11 | -- | 1.11 | -- | -- | -- | -0.114 | 10.7 | -- | -- | -- | -- |
| 159.62 | 0.588 | 11 | -- | -- | 0.413 | -- | -- | -0.257 | -- | 34 | 7406 | -- | -- |
| 171.96 | 0.612 | 11 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.05 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 2 | 55.21 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 10 |
| 3 | 55.25 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 4 | 55.28 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 7 | 55.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 10 | 55.49 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 12 | 55.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 26 | 55.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 28 | 55.66 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 47 | 55.84 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 51 | 56.32 | humidity | 60 | 90 | > th | dose independent | rect. | 17 | 10 |
| 62 | 57.10 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 66 | 57.13 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 18 |
| 77 | 57.31 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 92 | 57.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 97 | 57.44 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 117 | 57.53 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 125 | 57.63 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 10 |
| 127 | 57.65 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 128 | 57.68 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 12 |
| 151 | 57.79 | radiation | 1 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 172 | 57.87 | humidity | 70 | 10 | > th | dose independent | rect. | 18 | 10 |
| 213 | 58.03 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 218 | 58.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 219 | 58.07 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 276 | 58.22 | humidity | 60 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 289 | 58.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 314 | 58.33 | radiation | 1 | 30 | < th | dose dependent | sin | 14 | NA |
| 354 | 58.47 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 419 | 58.54 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 454 | 58.55 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 582 | 58.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 588 | 58.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 591 | 58.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 599 | 58.61 | radiation | 1 | 30 | > th | dose independent | sin | 13 | NA |
| 608 | 58.63 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 615 | 58.64 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 616 | 58.65 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 618 | 58.65 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 620 | 58.66 | humidity | 70 | 30 | < th | dose independent | rect. | 16 | 3 |
| 621 | 58.66 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 651 | 58.69 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 653 | 58.69 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 670 | 58.73 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 718 | 58.80 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 735 | 58.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 741 | 58.83 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 18 | 9 |
| 787 | 58.87 | humidity | 70 | 30 | > th | dose independent | sin | 13 | NA |
| 843 | 58.89 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 874 | 58.91 | radiation | 1 | 30 | < th | dose independent | sin | 14 | NA |
| 880 | 58.93 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 921 | 58.96 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 937 | 58.99 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 984 | 59.01 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |