Os06g0488200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin heavy chain (Fragment).
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Os06g0488200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin heavy chain (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.65 | 0.334 | 8.14 | 0.654 | 0.227 | -1.5 | -0.183 | 1.55 | 0.0981 | 11.3 | 18.01 | 108 | -- | -- |
| 52.61 | 0.338 | 8.17 | 0.423 | 0.224 | -1.44 | 0.117 | -- | 0.0239 | 11.3 | 17.49 | 119 | -- | -- |
| 50.77 | 0.332 | 8.14 | 0.635 | 0.23 | -1.49 | -- | 1.44 | 0.0907 | 11.1 | 18 | 107 | -- | -- |
| 52.56 | 0.338 | 8.17 | 0.386 | 0.209 | -1.48 | -- | -- | 0.0199 | 11.1 | 17.2 | 118 | -- | -- |
| 51.67 | 0.335 | 8.15 | 0.638 | -- | -1.4 | -- | 1.49 | 0.0875 | -- | 17.89 | 251 | -- | -- |
| 80.32 | 0.42 | 8.22 | 0.0533 | 0.439 | -- | 0.195 | -- | -0.212 | 5.09 | -- | -- | -- | -- |
| 80.42 | 0.42 | 8.22 | 0.0531 | 0.44 | -- | -- | -- | -0.213 | 5.07 | -- | -- | -- | -- |
| 53.35 | 0.34 | 8.18 | 0.383 | -- | -1.46 | -- | -- | 0.00912 | -- | 16.12 | 252 | -- | -- |
| 56.1 | 0.349 | 8.19 | -- | 0.193 | -1.29 | -- | -- | -0.0452 | 10 | 17.65 | 118 | -- | -- |
| 90.57 | 0.445 | 8.23 | 0.0688 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 80.49 | 0.42 | 8.22 | -- | 0.441 | -- | -- | -- | -0.219 | 5.07 | -- | -- | -- | -- |
| 56.87 | 0.351 | 8.19 | -- | -- | -1.26 | -- | -- | -0.0474 | -- | 17.47 | 248 | -- | -- |
| 90.7 | 0.445 | 8.23 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 2 | 51.60 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 3 | 51.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 7 | 51.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 13 | 52.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 34 | 52.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 36 | 52.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 54 | 53.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 59 | 53.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 64 | 53.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 71 | 53.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 94 | 53.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 106 | 53.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 107 | 53.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 140 | 53.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 150 | 53.94 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 173 | 54.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 187 | 54.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 206 | 54.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 217 | 54.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 237 | 54.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 248 | 54.30 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 297 | 54.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 425 | 54.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 446 | 54.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 455 | 54.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 456 | 54.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 463 | 54.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 464 | 54.81 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 516 | 54.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 577 | 54.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 17 |
| 627 | 55.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 725 | 55.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 735 | 55.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 779 | 55.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 856 | 55.26 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 907 | 55.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 947 | 55.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 993 | 55.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 8 |