BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0625900 Os01g0625900|AK063574
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0625900 Protein of unknown function DUF623, plant doma... 538 e-153
Os01g0226700 Protein of unknown function DUF623, plant doma... 96 5e-20
Os05g0219550 89 7e-18
Os04g0577700 Protein of unknown function DUF623, plant doma... 80 3e-15
Os10g0532600 Protein of unknown function DUF623, plant doma... 78 1e-14
Os02g0679700 Protein of unknown function DUF623, plant doma... 75 7e-14
Os03g0197900 Protein of unknown function DUF623, plant doma... 75 1e-13
Os03g0126600 71 1e-12
Os01g0732300 Protein of unknown function DUF623, plant doma... 69 4e-12
Os01g0749800 69 8e-12
>Os01g0625900 Protein of unknown function DUF623, plant domain containing protein
Length = 366
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 277/366 (75%), Positives = 277/366 (75%)
Query: 1 MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVRXXXXXXXXXXXXXXXXXAFVSLDKTNA 60
MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVR AFVSLDKTNA
Sbjct: 1 MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVRSTCTTNTTTTTTTTSSTAFVSLDKTNA 60
Query: 61 DTHQEXXXXXXXYFCTPCTYQRPKLDAPGXXXXXXXSASLVHISIDCTGGAGATSGRRSV 120
DTHQE YFCTPCTYQRPKLDAPG SASLVHISIDCTGGAGATSGRRSV
Sbjct: 61 DTHQEPPPPPSPYFCTPCTYQRPKLDAPGRPRRRRRSASLVHISIDCTGGAGATSGRRSV 120
Query: 121 HSDAPLLPYSSSLPTKDGXXXXXXXXXXXXXXXXXXXHCPSSSWGRARLPRGAPGQYSSS 180
HSDAPLLPYSSSLPTKDG HCPSSSWGRARLPRGAPGQYSSS
Sbjct: 121 HSDAPLLPYSSSLPTKDGRKQSRARRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSS 180
Query: 181 SSTVTDDELAPFSTDEEGGEEADTRXXXXXXXXXXXXXXEFYHTNSSSSLARKGHKNXXX 240
SSTVTDDELAPFSTDEEGGEEADTR EFYHTNSSSSLARKGHKN
Sbjct: 181 SSTVTDDELAPFSTDEEGGEEADTRTLFSSLSFSSDSTSEFYHTNSSSSLARKGHKNAPA 240
Query: 241 XXXXXXXXXXXITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLXXXXXXXXXXXM 300
ITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQL M
Sbjct: 241 RRPPARRASARITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLGTDDDTAAGAGM 300
Query: 301 AVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWE 360
AVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWE
Sbjct: 301 AVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWE 360
Query: 361 AVFGEE 366
AVFGEE
Sbjct: 361 AVFGEE 366
>Os01g0226700 Protein of unknown function DUF623, plant domain containing protein
Length = 250
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 62/107 (57%), Gaps = 25/107 (23%)
Query: 258 DAFRPVVSVAATKKQHNDMKKKEETAIKRQLXXXXXXXXXXXMAVVKRSSNPYADFRSSM 317
D FRPVVS A E ++R AVVKRS +PYADFRSSM
Sbjct: 168 DGFRPVVSAA-------------EEQVRRGF------------AVVKRSRDPYADFRSSM 202
Query: 318 VEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVFG 364
VEMVV R++ E+E LL SYLSLN+P+HHP IL AF D+W + G
Sbjct: 203 VEMVVGRQLFGAAELERLLRSYLSLNAPRHHPVILQAFSDIWVVLHG 249
>Os05g0219550
Length = 295
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 24/108 (22%)
Query: 257 ADAFRPVVSVAATKKQHNDMKKKEETAIKRQLXXXXXXXXXXXMAVVKRSSNPYADFRSS 316
A AFRP+VS A E +++ L AVVKRSS+PY DFR S
Sbjct: 211 AAAFRPLVSTTA------------EEEVRKGL------------AVVKRSSDPYGDFRES 246
Query: 317 MVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVFG 364
M EM+VER++ + E+E LL SYLSLN P+ HP IL AF D+W + G
Sbjct: 247 MAEMIVERQVFAAAELERLLRSYLSLNPPRLHPVILQAFSDIWVVLRG 294
>Os04g0577700 Protein of unknown function DUF623, plant domain containing protein
Length = 367
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
+AVVK+S +P DFR SM+ M+VE RI + E+ ELL +L LN+P HH AIL AF ++W
Sbjct: 272 LAVVKQSEDPRGDFRRSMLNMIVENRIVTGDELRELLHRFLELNAPHHHDAILRAFAEIW 331
Query: 360 EAVF 363
+ VF
Sbjct: 332 DEVF 335
>Os10g0532600 Protein of unknown function DUF623, plant domain containing protein
Length = 263
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
+AVVK S++P DFR SM++M+VE+ I E+ ELL +L LNSP HH IL AF ++W
Sbjct: 159 VAVVKESADPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIW 218
Query: 360 EAVF 363
E VF
Sbjct: 219 EEVF 222
>Os02g0679700 Protein of unknown function DUF623, plant domain containing protein
Length = 281
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
+AVVK+S +P DFR SM++M+VE I + ++ E+L +L+LN+P HH IL AF ++W
Sbjct: 172 VAVVKQSDDPLGDFRQSMLQMIVENGIVAGEDLREMLRRFLTLNAPHHHDVILRAFAEIW 231
Query: 360 EAVF 363
+ VF
Sbjct: 232 DGVF 235
>Os03g0197900 Protein of unknown function DUF623, plant domain containing protein
Length = 275
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
AVVKRS +P ADFR SM EMVV R I +E LL +L+LN +H I+AAF DVW
Sbjct: 184 FAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAFGDVW 243
Query: 360 EAVF 363
EAVF
Sbjct: 244 EAVF 247
>Os03g0126600
Length = 236
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 302 VVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEA 361
VV S +P DFR SM +M+VE I + PE+ ELL +LSLNS +HH IL AF DV E
Sbjct: 149 VVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVCEE 208
Query: 362 VF 363
+F
Sbjct: 209 LF 210
>Os01g0732300 Protein of unknown function DUF623, plant domain containing protein
Length = 323
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVP------EMEELLGSYLSLNSPQHHPAILA 353
AVVKRSS+PY DFR SM EM+ E C E LL +YL LNSP+H+PAILA
Sbjct: 253 FAVVKRSSDPYEDFRKSMEEMIAEGAACGGGDGDGELSAERLLETYLVLNSPRHYPAILA 312
Query: 354 AFEDVWEAVF 363
AF DV E +F
Sbjct: 313 AFADVRETLF 322
>Os01g0749800
Length = 324
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
AVV+R+S+P +FR+SMVEM+ +RI E+E LL YLSLN+ +HH I+ F VW
Sbjct: 249 FAVVRRTSDPQREFRASMVEMIASKRIGRPEELETLLACYLSLNADEHHDCIVKVFRQVW 308
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,065,334
Number of extensions: 322257
Number of successful extensions: 673
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 10
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)