FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0679700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF623, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0572) R2 : 0.152
β1 : 1.86 (0.257) R2dD : 0.215 R2D : -0.141
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.08 (0.269) R2dE : 0.0682 R2E : -0.0746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.23 (0.864) R2dD*E : 0.328 R2D*E : -0.318
γ1 : 0.587 (0.122) R2dN8 : 0.081 R2N8 : -0.0246
σ : 0.901
deviance : 374.64
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.96
memory length : 3851
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.47 0.887 3.6 1.8 0.425 -1.31 -1.62 -6.43 0.554 8.22 23.23 4187 -- --
395.44 0.933 3.79 0.985 0.444 0.593 -1.6 -- 0.459 8.74 23.23 4187 -- --
362.8 0.887 3.62 1.84 0.476 -1.05 -- -6.15 0.573 7.3 23.98 3732 -- --
394.6 0.925 3.79 1.22 0.344 1.09 -- -- 0.477 8.93 14.32 9426 -- --
374.64 0.901 3.62 1.86 -- -1.08 -- -6.23 0.587 -- 23.96 3851 -- --
400.11 0.938 3.81 0.858 0.417 -- -1.55 -- 0.378 8.36 -- -- -- --
406.17 0.944 3.81 0.804 0.464 -- -- -- 0.374 7.01 -- -- -- --
402.32 0.934 3.79 1.31 -- 1.29 -- -- 0.512 -- 14.8 9431 -- --
419.05 0.953 3.83 -- 0.474 0.976 -- -- 0.291 7.03 11 6178 -- --
417.47 0.955 3.82 0.813 -- -- -- -- 0.383 -- -- -- -- --
423.19 0.962 3.83 -- 0.473 -- -- -- 0.285 6.9 -- -- -- --
430.36 0.966 3.84 -- -- 0.875 -- -- 0.305 -- 10.94 6177 -- --
434.91 0.973 3.84 -- -- -- -- -- 0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.18 temperature 20 14400 < th dose dependent rect. 5 2
2 347.29 radiation 1 14400 < th dose independent rect. 18 11
6 348.17 radiation 1 43200 > th dose independent rect. 7 2
7 348.23 radiation 1 43200 < th dose independent rect. 7 2
10 348.53 radiation 1 14400 > th dose independent rect. 18 11
11 348.63 radiation 1 43200 < th dose dependent rect. 7 1
18 348.89 humidity 70 43200 < th dose independent rect. 7 2
37 349.28 humidity 70 43200 < th dose dependent rect. 8 1
49 349.41 radiation 1 14400 > th dose independent rect. 18 1
59 349.44 humidity 60 43200 < th dose dependent rect. 10 2
96 350.05 radiation 1 14400 < th dose independent rect. 18 8
98 350.07 temperature 20 14400 < th dose independent rect. 6 1
114 350.14 radiation 1 14400 < th dose independent rect. 18 1
117 350.16 radiation 1 14400 < th dose independent rect. 18 4
133 350.32 temperature 20 43200 > th dose independent rect. 6 1
153 350.50 humidity 60 43200 > th dose independent rect. 7 2
168 350.57 humidity 50 43200 > th dose independent rect. 10 2
184 350.67 temperature 20 43200 < th dose dependent sin 8 NA
187 350.68 temperature 20 43200 > th dose independent rect. 22 1
198 350.77 temperature 20 43200 < th dose independent rect. 22 1
217 350.85 temperature 20 43200 > th dose independent rect. 22 3
230 350.92 temperature 20 43200 < th dose independent rect. 22 3
238 350.96 temperature 20 43200 < th dose independent rect. 22 18
247 351.01 radiation 40 43200 < th dose dependent rect. 18 8
261 351.06 temperature 20 43200 > th dose independent rect. 22 18
308 351.18 temperature 20 43200 > th dose independent rect. 24 1
318 351.20 temperature 20 43200 < th dose independent rect. 22 12
321 351.21 temperature 20 43200 < th dose independent rect. 24 1
323 351.21 temperature 20 43200 < th dose independent rect. 22 10
356 351.27 temperature 20 43200 < th dose independent rect. 12 19
381 351.30 temperature 20 43200 < th dose independent sin 7 NA
400 351.32 temperature 20 43200 > th dose independent rect. 22 13
526 351.45 temperature 20 43200 > th dose independent sin 6 NA
541 351.46 temperature 20 43200 < th dose independent no NA NA
548 351.46 temperature 20 43200 < th dose independent rect. 3 23
571 351.48 radiation 1 43200 < th dose dependent rect. 6 12
574 351.49 humidity 50 43200 < th dose independent rect. 10 2
610 351.52 temperature 20 43200 > th dose independent rect. 12 19
717 351.61 temperature 20 43200 > th dose independent rect. 3 13
748 351.63 wind 1 43200 < th dose independent rect. 12 2
753 351.63 temperature 20 43200 > th dose independent rect. 3 23
774 351.66 temperature 20 43200 > th dose independent no NA NA
780 351.66 radiation 10 43200 < th dose dependent rect. 18 1
791 351.67 radiation 10 43200 < th dose dependent rect. 18 4
799 351.68 atmosphere 1015 43200 > th dose dependent rect. 3 1
904 351.77 temperature 20 43200 > th dose independent rect. 6 23
912 351.78 atmosphere 1015 43200 > th dose dependent rect. 22 8
930 351.79 atmosphere 1015 43200 > th dose dependent rect. 21 10