BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0563000 Os01g0563000|AK067665
(422 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0563000 Peptidylprolyl isomerase, FKBP-type domain con... 778 0.0
Os01g0562400 Peptidylprolyl isomerase, FKBP-type domain con... 322 3e-88
Os01g0562100 319 3e-87
Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain con... 313 2e-85
Os08g0525600 Similar to Peptidylprolyl isomerase 311 5e-85
Os02g0491400 Similar to Peptidylprolyl isomerase 301 7e-82
Os01g0564300 Peptidylprolyl isomerase, FKBP-type domain con... 275 3e-74
Os03g0367000 Similar to Pasticcino 1-A 74 2e-13
>Os01g0563000 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 422
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/422 (90%), Positives = 384/422 (90%)
Query: 1 MPISHELGEPDESFYNXXXXXXXXXXXXXXXXXXXXXXXXXXSLRHPGFNKWTVQQGAAG 60
MPISHELGEPDESFYN SLRHPGFNKWTVQQGAAG
Sbjct: 1 MPISHELGEPDESFYNLWKEECEELWEEEDELWGDEDVEEELSLRHPGFNKWTVQQGAAG 60
Query: 61 GDHIRAKDKNFYCFEVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSM 120
GDHIRAKDKNFYCFEVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSM
Sbjct: 61 GDHIRAKDKNFYCFEVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSM 120
Query: 121 QPGEKAIFTIPSALTMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKI 180
QPGEKAIFTIPSALTMTKAG QTLRFEIELIAMFTIIDIFKDEGILKKI
Sbjct: 121 QPGEKAIFTIPSALTMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKI 180
Query: 181 VKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEG 240
VKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEG
Sbjct: 181 VKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEG 240
Query: 241 EEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRIG 300
EEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRIG
Sbjct: 241 EEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRIG 300
Query: 301 NSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEE 360
NSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEE
Sbjct: 301 NSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEE 360
Query: 361 GEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVRYYVRITGETSVVHS 420
GEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVRYYVRITGETSVVHS
Sbjct: 361 GEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVRYYVRITGETSVVHS 420
Query: 421 EP 422
EP
Sbjct: 421 EP 422
>Os01g0562400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 517
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/297 (57%), Positives = 208/297 (70%), Gaps = 10/297 (3%)
Query: 110 MHGFNLAVSSMQPGEKAIFTIPSALTMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIID 169
M GF++AVSSMQ GEKA+FTIP L TK+ + LRF+IELI++ TI D
Sbjct: 1 MRGFSMAVSSMQAGEKAVFTIPPELAGTKSRCPVDIPGNIAPNEALRFDIELISLVTITD 60
Query: 170 IFKDEGILKKIVKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPA 229
I DEGILKKI+K K D V Y+ACL DG SVS SEG+EF+L +GFFCPA
Sbjct: 61 ILDDEGILKKIIKRGLGSDKPC-DLDEALVNYNACLEDGMSVSMSEGIEFNLAEGFFCPA 119
Query: 230 FAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIG 287
FA AV TM EGEEAVLIVKP+Y FGE+GRPS G+EA VPPDATLYV+L + W +R IG
Sbjct: 120 FARAVETMTEGEEAVLIVKPEYGFGERGRPSIGDEAGVPPDATLYVYLQLMSWKTVRHIG 179
Query: 288 EDQAIAKKTLRIGNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQV 347
E+ I KKTL GN + T+++AVV VRL+GKLQDG VFD+RG+ DEPF+F+VDE QV
Sbjct: 180 ENGTILKKTLCRGNLEGQQTENEAVVGVRLIGKLQDGAVFDQRGHEGDEPFKFMVDEEQV 239
Query: 348 IDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVN 404
+GL+E+V+TM EGEV+ FTIPP Q Q VP ++V Y+IEL+SVVN
Sbjct: 240 SEGLEEAVLTMREGEVSLFTIPPHRV-------QDQLLVVPVGSSVTYEIELVSVVN 289
>Os01g0562100
Length = 1342
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/295 (57%), Positives = 208/295 (70%), Gaps = 10/295 (3%)
Query: 115 LAVSSMQPGEKAIFTIPSALTMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDE 174
+AVSSMQ GEKA+FTIP L TK+ Q L+F++ELI++ TI DI +E
Sbjct: 1 MAVSSMQAGEKAVFTIPPELAGTKSRCPADIPANLPPNQALQFDVELISLITITDILDNE 60
Query: 175 GILKKIVKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAV 234
GILKK +K + K D V V Y+ACL DG SVS SEGVEF+L +GFFCPAFA AV
Sbjct: 61 GILKKTMKRGVGNDKPC-DLDEVLVNYNACLEDGMSVSMSEGVEFNLAEGFFCPAFARAV 119
Query: 235 HTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAI 292
TM EGEE VLIVK +Y FGE+GRPS G+EAAVPPDATLYV+L + W +R IG++ I
Sbjct: 120 ETMTEGEEVVLIVKLEYGFGERGRPSIGDEAAVPPDATLYVYLQLMSWKTVRHIGQNGTI 179
Query: 293 AKKTLRIGNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLD 352
KKTLR GN + HT++QAVV VRL+GKL DG VFD+RG+ DEPFEFVVDE QV DGL+
Sbjct: 180 LKKTLRRGNLEGQHTENQAVVGVRLIGKLHDGAVFDQRGHQGDEPFEFVVDEEQVSDGLE 239
Query: 353 ESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVRY 407
E+V+TM EGEV+ FTIPPQ Q Q VP ++V Y+IEL+SVVN ++
Sbjct: 240 EAVLTMWEGEVSLFTIPPQ-------CLQDQHVVVPPGSSVTYEIELVSVVNDKH 287
>Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 585
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 227/330 (68%), Gaps = 11/330 (3%)
Query: 75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134
EVQVH+TG L+DGT+F SSR+ P +F LGQ +V+ G++ + +M+ GE+A+FT+P L
Sbjct: 70 EVQVHYTGTLLDGTKFDSSRDRGTPFKFSLGQGEVIKGWDEGIKTMKKGEQAVFTVPPEL 129
Query: 135 TMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194
+AG TLRF++EL++ ++ DI KD GI KK++ AE + ++
Sbjct: 130 AYGEAGSPPAIPPNA----TLRFDVELLSWASVKDICKDGGIFKKVL--AEGHKWENPKD 183
Query: 195 -DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAF 253
D V VKY+A L DGT VSKS+GVEF++ DG+FCPA + AV TMK+GE+ +L VKP+Y F
Sbjct: 184 LDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCPALSKAVKTMKKGEKVLLTVKPQYGF 243
Query: 254 GEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQA 311
GEQG+P+ G EAAVPP+ATLYV L + W + IG+D+ I KK L+ G A
Sbjct: 244 GEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLKEGEGYE-RPNDGA 302
Query: 312 VVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371
VV+VR +GKL+DGTVF ++G+ DEPFEF DE QVI+GLD +V+TM++GEVA +PPQ
Sbjct: 303 VVRVRFIGKLEDGTVFSKKGHDGDEPFEFRTDEEQVIEGLDRTVVTMKKGEVALVRLPPQ 362
Query: 372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401
HAF + + Q A VP N+TV Y++EL+S
Sbjct: 363 HAFGSTETKQD-LAVVPANSTVWYEVELVS 391
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 21/240 (8%)
Query: 174 EGILKKIVKNAEP-DRKQSHSSDFVFVKYDACLMDGTSV--SKSEGV--EFSLTDGFFCP 228
+G+ K+++K E DR +S D V V Y L+DGT S+ G +FSL G
Sbjct: 49 QGLRKRLLKEGEGWDRPES--GDEVQVHYTGTLLDGTKFDSSRDRGTPFKFSLGQGEVIK 106
Query: 229 AFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRI 286
+ + TMK+GE+AV V P+ A+GE G P A+PP+ATL + + W ++ I
Sbjct: 107 GWDEGIKTMKKGEQAVFTVPPELAYGEAGSPP-----AIPPNATLRFDVELLSWASVKDI 161
Query: 287 GEDQAIAKKTLRIGNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQ 346
+D I KK L G+ V+ V+ +L+DGTV + + EF V +G
Sbjct: 162 CKDGGIFKKVLAEGHKWENPKDLDEVL-VKYEARLEDGTVVSK-----SDGVEFAVKDGY 215
Query: 347 VIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQF-AFVPRNATVVYKIELLSVVNV 405
L ++V TM++GE T+ PQ+ F G A VP NAT+ +ELLS V
Sbjct: 216 FCPALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTV 275
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 19/131 (14%)
Query: 285 RIGEDQAIAKKTLRIGNSQRIHTQSQAV--------VKVRLLGKLQDGTVFDR-RGYGDD 335
++GE++ I K+ LR +R+ + + V+V G L DGT FD R G
Sbjct: 39 KVGEEKEIGKQGLR----KRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRG-- 92
Query: 336 EPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVY 395
PF+F + +G+VI G DE + TM++GE A FT+PP+ A+ GS +P NAT+ +
Sbjct: 93 TPFKFSLGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPA----IPPNATLRF 148
Query: 396 KIELLSVVNVR 406
+ELLS +V+
Sbjct: 149 DVELLSWASVK 159
>Os08g0525600 Similar to Peptidylprolyl isomerase
Length = 580
Score = 311 bits (797), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 162/331 (48%), Positives = 222/331 (67%), Gaps = 9/331 (2%)
Query: 75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134
EV+VH+TG L+DG +F SSR+ P +F LGQ V+ G++L + +M+ GE A+FTIP L
Sbjct: 66 EVEVHYTGTLLDGKKFDSSRDRGTPFKFKLGQGQVIKGWDLGIKTMKKGENAVFTIPPDL 125
Query: 135 TMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194
++G TL+F++EL++ ++ DI +D GI KKI+K E +
Sbjct: 126 AYGESGSPPTIPASA----TLQFDVELLSWTSVKDICQDGGIFKKILKEGE-KWENPKDL 180
Query: 195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254
D VFVKY+A L DGT +SKSEG EF++ DGFFCPA A AV TMK+ E+ +L VKP+Y FG
Sbjct: 181 DEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCPALAKAVKTMKKAEKVLLTVKPQYGFG 240
Query: 255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312
E GRP+ GEE AVPP+ATL V+L V W + IG+D+ I KK L G + AV
Sbjct: 241 ENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKKILKKVLTEGTGYERPNEG-AV 299
Query: 313 VKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQH 372
VKV++ GKLQDGT+F ++G+ + EPFEF DE +VIDG+D +V+ M+ GEVA TIPP++
Sbjct: 300 VKVKITGKLQDGTIFTKKGHDEPEPFEFKTDEEEVIDGIDRAVLNMKNGEVALVTIPPEY 359
Query: 373 AFDAVGSDQHQFAFVPRNATVVYKIELLSVV 403
AF + S Q A VP N+TV+Y++EL+S V
Sbjct: 360 AFGSTESKQD-LAVVPPNSTVIYEVELVSFV 389
>Os02g0491400 Similar to Peptidylprolyl isomerase
Length = 682
Score = 301 bits (771), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 228/332 (68%), Gaps = 15/332 (4%)
Query: 75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134
EVQVH+TG L+DGT+F SSR+ D P +F LGQ V+ G++L + +M+ GE AIFTIP L
Sbjct: 115 EVQVHYTGTLLDGTKFDSSRDRDAPFKFTLGQGQVIKGWDLGIKTMKKGENAIFTIPPEL 174
Query: 135 TMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQS-HS 193
+ G TL+F++ELI+ ++ DI KD GILKK++ AE + ++
Sbjct: 175 AYGEDGSPPVIPPNA----TLQFDVELISWESVKDICKDGGILKKVL--AEGTKWENPRD 228
Query: 194 SDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAF 253
D VFVKY+ L DGT V++S+GVEF++ DG FCPA + AV TMK+ E+A+L VKP+Y F
Sbjct: 229 RDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCPAISKAVKTMKKNEKALLTVKPQYGF 288
Query: 254 GEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQA 311
GEQGRP+ +EAA+PP+ATL+++L V W + IG D+ I KK L G +
Sbjct: 289 GEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKKILKKILHEGEGYERPSDC-T 347
Query: 312 VVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371
+V+V+L+GKL+DGT+F RG+ DEPFEF DE QV++GLD++V++M++GEVA TIPP+
Sbjct: 348 LVRVKLIGKLEDGTIFVTRGHDGDEPFEFKTDEDQVVEGLDKAVLSMKKGEVALVTIPPE 407
Query: 372 HAFDAVGSDQ--HQFAFVPRNATVVYKIELLS 401
+AF GSD+ + VP N+TV Y++EL+S
Sbjct: 408 YAF---GSDETRQDLSVVPPNSTVYYEVELVS 436
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 17/144 (11%)
Query: 286 IGEDQAIAKKTLRIGNSQRIHTQSQAV--------VKVRLLGKLQDGTVFDRRGYGDDEP 337
+GE++ I K+ LR +++ + + V+V G L DGT FD D P
Sbjct: 85 VGEEKEIGKEGLR----KKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDS-SRDRDAP 139
Query: 338 FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKI 397
F+F + +GQVI G D + TM++GE A FTIPP+ A+ GS +P NAT+ + +
Sbjct: 140 FKFTLGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSP----PVIPPNATLQFDV 195
Query: 398 ELLSVVNVRYYVRITGETSVVHSE 421
EL+S +V+ + G V +E
Sbjct: 196 ELISWESVKDICKDGGILKKVLAE 219
>Os01g0564300 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 422
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/296 (48%), Positives = 183/296 (61%), Gaps = 29/296 (9%)
Query: 48 GFNKWTVQQGAAGGDHIR-------------------------AKDKNFYCFEVQVHFTG 82
GFN WTVQ+ +AG I D YC E QVHF G
Sbjct: 38 GFNMWTVQKPSAGSTAINLLFPGGATAAELMYAVPGASKCSKPEDDDAVYCVEAQVHFIG 97
Query: 83 ELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSALTMTKAGXX 142
E +DGT+FVS+REN +P+RFILGQE+VMHG +L VS+M+PGE+AIFTIP L +TK+G
Sbjct: 98 EQLDGTEFVSTRENGVPQRFILGQENVMHGLSLVVSAMRPGERAIFTIPPKLAITKSGSP 157
Query: 143 XXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSSDFVFVKYD 202
QTLRFEIELI++F I DI ++ ILKKI+K PD+ S+ +D V V Y+
Sbjct: 158 ASIPSSIPPEQTLRFEIELISLFAITDILENGSILKKIIKRPLPDKSPSNHADTVIVNYN 217
Query: 203 ACLMDGTSVSKSEGVEFSLTD--GFFCPAFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPS 260
ACL DG SVSKSE +E +L GFFCPA +AV TM+EGEEA+ IVKP+YAFG QGR S
Sbjct: 218 ACLEDGNSVSKSERLELNLASRTGFFCPALKYAVKTMREGEEAIFIVKPRYAFGAQGRDS 277
Query: 261 QGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRIGNSQRIHTQSQAVVKVR 316
G++AAVPPDATLY+++ R+ + +K I T ++A+ K R
Sbjct: 278 TGDQAAVPPDATLYLYVQLA--ERKTAKQNEAEEKGPFIDGPNEAKTTARALPKRR 331
>Os03g0367000 Similar to Pasticcino 1-A
Length = 632
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 148/361 (40%), Gaps = 39/361 (10%)
Query: 58 AAGGDHIRAKDKNFYCFEVQVHFTGELVDGTQFVSSRE----NDIPERFILGQEDVMHGF 113
+ GGD A+ +V VH T +DG S+R +P RF+LG+ ++ GF
Sbjct: 46 SGGGDATPAEGD-----QVIVHCTTRTIDGIIVNSTRREHGGKGVPLRFVLGKSKMILGF 100
Query: 114 NLAVSSMQPGEKAIFTIPSALTMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKD 173
+M GE A+F + + + L+FEIE++ F + +D
Sbjct: 101 AEGFPTMLMGEIAMFKMKPQIHYAEEDCPVTAPDGFPKDDELQFEIEMLDFFKAKIVAED 160
Query: 174 EGILKKIV---KNAEPDRKQSHSSDFVFVKYDACLMDGTSV--SKSEGVEFSLTDGFFCP 228
G++KKI+ K E R+ V + A DG + SK E F++
Sbjct: 161 LGVVKKIIDEGKGWETPREPYE----VTARITARTGDGKELLPSKEEPYFFTIGKSEVPK 216
Query: 229 AFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPS-QGEEAAVPPDATLYVHLLFVCWIRRIG 287
+ +M E+A++ V Y P +G E + V L+ +R +
Sbjct: 217 GLEMGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIE-----EVQFEVELVQFVQVRDML 271
Query: 288 EDQAIAKKTLRIGNSQ-----RIHTQSQAVVKVRLLGKLQD---GTVFDRRGYGDDEPFE 339
D + K+ + G + +H ++++V G L D +D R EP E
Sbjct: 272 GDGRLIKRRVVDGKGEFPMDCPLH---DSLLRVHYKGMLLDEPKSIFYDTRVDNHGEPLE 328
Query: 340 FVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIEL 399
F EG V +G + V M GE + T PP A+D + A VP A V ++IEL
Sbjct: 329 FCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAYDKF----PRPANVPEGAHVQWEIEL 384
Query: 400 L 400
L
Sbjct: 385 L 385
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,076,214
Number of extensions: 509536
Number of successful extensions: 1072
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 11
Length of query: 422
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 318
Effective length of database: 11,605,545
Effective search space: 3690563310
Effective search space used: 3690563310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)