Os01g0564300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os01g0564300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 345.57 | 0.873 | 11.4 | 0.804 | 1.55 | -0.302 | -0.714 | -11.4 | 2.27 | 3.55 | 10.02 | 4347 | -- | -- |
| 466.01 | 1.01 | 11 | 3.39 | 1.57 | 0.335 | -1.33 | -- | 2.97 | 3.84 | -9.982 | 629 | -- | -- |
| 346.83 | 0.867 | 11.4 | 0.784 | 1.55 | -0.27 | -- | -11.4 | 2.27 | 3.47 | 9.382 | 4249 | -- | -- |
| 469.7 | 1.02 | 11 | 3.42 | 1.63 | 0.401 | -- | -- | 2.97 | 3.42 | 9.382 | 4249 | -- | -- |
| 479.69 | 1.02 | 11.4 | 0.803 | -- | -0.0136 | -- | -11.2 | 2.28 | -- | 9.222 | 4274 | -- | -- |
| 467.63 | 1.01 | 11 | 3.48 | 1.53 | -- | -1.12 | -- | 3.02 | 3.63 | -- | -- | -- | -- |
| 471.25 | 1.02 | 11 | 3.5 | 1.52 | -- | -- | -- | 3.03 | 3.5 | -- | -- | -- | -- |
| 573.23 | 1.12 | 10.9 | 3.82 | -- | -1.38 | -- | -- | 3.25 | -- | 9.382 | 4249 | -- | -- |
| 576.33 | 1.12 | 11.2 | -- | 1.5 | 2.38 | -- | -- | 1.93 | 3.57 | -62.22 | 47520 | -- | -- |
| 600.76 | 1.15 | 11 | 3.57 | -- | -- | -- | -- | 3.07 | -- | -- | -- | -- | -- |
| 794.36 | 1.32 | 11.1 | -- | 1.59 | -- | -- | -- | 2.64 | 3.49 | -- | -- | -- | -- |
| 700.96 | 1.23 | 11.2 | -- | -- | 2.47 | -- | -- | 1.93 | -- | -54.04 | 47520 | -- | -- |
| 936.09 | 1.43 | 11.1 | -- | -- | -- | -- | -- | 2.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 327.98 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 2 | 328.06 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 3 | 328.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 5 | 328.36 | wind | 5 | 43200 | > th | dose dependent | sin | 10 | NA |
| 12 | 329.01 | wind | 7 | 43200 | > th | dose independent | sin | 10 | NA |
| 16 | 329.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 17 | 329.19 | wind | 5 | 43200 | < th | dose independent | sin | 10 | NA |
| 46 | 330.66 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 248 | 336.15 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 12 |
| 275 | 336.56 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 283 | 336.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 322 | 337.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 343 | 337.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 361 | 337.65 | temperature | 15 | 4320 | > th | dose dependent | sin | 22 | NA |
| 363 | 337.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 9 |
| 374 | 337.73 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 396 | 337.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 518 | 338.96 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 524 | 339.03 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 530 | 339.11 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 578 | 339.52 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 636 | 339.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 799 | 341.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 946 | 342.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |