BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0564300 Os01g0564300|AK064825
(422 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579 165 4e-41
AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563 159 2e-39
AT3G55520.1 | chr3:20594177-20595128 FORWARD LENGTH=191 59 6e-09
>AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579
Length = 578
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 71 VPGASKCSKPEDDDAVYCVEAQVHFIGEQLDGTEFVSTRENGVPQRFILGQENVMHGLSL 130
V K PE+ D E +VH+ G LDGT+F S+R+ G P +F LGQ +V+ G L
Sbjct: 53 VKECEKWDTPENGD-----EVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDL 107
Query: 131 VVSAMRPGERAIFTIPPKLAITKSGXXXXXXXXXXXEQTLRFEIELISLFAITDILENGS 190
+ M+ GE AIFTIPP+LA ++G TL+F++ELI+ ++ DI +G
Sbjct: 108 GIKTMKKGENAIFTIPPELAYGETGSPPTIPPNA----TLQFDVELIAWRSVKDICGDGG 163
Query: 191 ILKKIIKRPLPDKSPSNHADTVIVNYNACLEDGNSVSKSERLELNLASRTGFFCPALKYA 250
+ KKII + P + D V V Y A LEDG V KS+ +E + + G FCPAL A
Sbjct: 164 VSKKIIVEGEKWEKPKD-LDEVYVKYEARLEDGTIVGKSDGVEFTV--KEGHFCPALSKA 220
Query: 251 VKTMREGEEAIFIVKPRYAFGAQGR-DSTGDQAAVPPDATLYLYVQLAERKT 301
VKTM+ GE+ + VKP+Y FG GR S G QAA+PP+ATL + ++L KT
Sbjct: 221 VKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKT 272
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
Query: 74 ASKCSKPEDDDAVYCVEAQVHFIGEQLDGTEFVSTRENGVPQRFILGQENVMHGLSLVVS 133
K KP+D D VY V + DGT + + +GV F + + + LS V
Sbjct: 172 GEKWEKPKDLDEVY-----VKYEARLEDGT--IVGKSDGV--EFTVKEGHFCPALSKAVK 222
Query: 134 AMRPGERAIFTIPPKLAITKSGXXXXXXXXXXX--EQTLRFEIELISLFAITDILENGSI 191
M+ GE+ + T+ P+ + G TL+ ++EL+S + ++ ++ +
Sbjct: 223 TMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKV 282
Query: 192 LKKIIKRPLPDKSPSNHADTVIVNYNACLEDGNSV-------SKSERLELNLASRTGFFC 244
+KKI+K + P N V + L+DG +V E E +
Sbjct: 283 IKKILKEGEGYERP-NEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQ--VI 339
Query: 245 PALKYAVKTMREGEEAIFIVKPRYAFGAQGRDSTGDQAAVPPDATLYLYVQL 296
L+ AV M++GE A+ + P YAFG+ +S + A +PP++T+Y V+L
Sbjct: 340 EGLEKAVMGMKKGEVALITISPEYAFGSS--ESKQELAVIPPNSTVYYEVEL 389
>AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563
Length = 562
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 135/225 (60%), Gaps = 12/225 (5%)
Query: 80 PEDDDAVYCVEAQVHFIGEQLDGTEFVSTRENGVPQRFILGQENVMHGLSLVVSAMRPGE 139
PE+ D E +VH+ G LDGT+F S+R+ P +F LGQ V+ G + + M+ GE
Sbjct: 54 PENGD-----EVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGE 108
Query: 140 RAIFTIPPKLAITKSGXXXXXXXXXXXEQTLRFEIELISLFAITDILENGSILKKIIKRP 199
A+FTIP +LA +SG TL+F++EL+ ++ DI ++G + KKI+
Sbjct: 109 NAVFTIPAELAYGESGSPPTIPANA----TLQFDVELLKWDSVKDICKDGGVFKKILAVG 164
Query: 200 LPDKSPSNHADTVIVNYNACLEDGNSVSKSERLELNLASRTGFFCPALKYAVKTMREGEE 259
++P + D V+V + A LEDG V KS+ +E + + G FCPAL AVKTM++GE+
Sbjct: 165 EKWENPKD-LDEVLVKFEAKLEDGTVVGKSDGVEFTV--KDGHFCPALTKAVKTMKKGEK 221
Query: 260 AIFIVKPRYAFGAQGRDSTGDQAAVPPDATLYLYVQLAERKTAKQ 304
+ VKP+Y FG +G+ ++ + AVPP+ATL + ++L KT +
Sbjct: 222 VLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSE 266
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 17/228 (7%)
Query: 74 ASKCSKPEDDDAVYCVEAQVHFIGEQLDGTEFVSTRENGVPQRFILGQENVMHGLSLVVS 133
K P+D D V V F + DGT V + +GV F + + L+ V
Sbjct: 164 GEKWENPKDLDEVL-----VKFEAKLEDGT--VVGKSDGV--EFTVKDGHFCPALTKAVK 214
Query: 134 AMRPGERAIFTIPPKLAITKSGXXXXXXXXXXX-EQTLRFEIELISLFAITDILENGSIL 192
M+ GE+ + T+ P+ + G TL +EL+S ++++ ++ ++
Sbjct: 215 TMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVV 274
Query: 193 KKIIKRPLPDKSPSNHADTVIVNYNACLEDGNSVSKSERLE----LNLASRTGFFCPALK 248
KK++K + P N V V L+DG K E + L
Sbjct: 275 KKVLKEGDGYERP-NEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLD 333
Query: 249 YAVKTMREGEEAIFIVKPRYAFGAQGRDSTGDQAAVPPDATLYLYVQL 296
AV M++GE A+ + P YAFG+ +S + A VPP++T+ V L
Sbjct: 334 RAVMKMKKGEVALVTIDPEYAFGSN--ESQQELAVVPPNSTVTYEVDL 379
>AT3G55520.1 | chr3:20594177-20595128 FORWARD LENGTH=191
Length = 190
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 184 DILENGSILKKIIKRPLPDK-SPSNHADTVIVNYNACLEDGNSV---SKSERLELNLASR 239
D+ +G +LKKI++ PD SPS+ V V+Y L + V ++ + L +
Sbjct: 6 DLSGDGGVLKKIVRSAKPDAISPSDDLPVVDVHYEGILAEDEKVFDTTREDNLVFSFELG 65
Query: 240 TGFFCPALKYAVKTMREGEEAIFIVKPRYAFGAQGRDSTGDQAAVPPDATLYLYVQL 296
TG + A+KTM+ GE A KP YA+G G +PPDATL V+L
Sbjct: 66 TGSVIRSWDIALKTMKVGEVAKITCKPEYAYG-----RAGSPPDIPPDATLIFEVEL 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,921,786
Number of extensions: 358174
Number of successful extensions: 744
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 6
Length of query: 422
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 321
Effective length of database: 8,337,553
Effective search space: 2676354513
Effective search space used: 2676354513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)