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Os03g0367000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pasticcino 1-A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.012) R2 : 0.128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0252) R2dN8 : 0.165 R2N8 : 0.128
σ : 0.226
deviance : 23.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.23 0.143 10.8 -0.29 0.455 -0.127 0.0218 0.713 0.139 2.96 20.89 639 -- --
9.58 0.144 10.8 -0.28 0.447 -0.444 -0.0242 -- 0.15 2.67 18.71 1481 -- --
9.23 0.142 10.8 -0.29 0.455 -0.126 -- 0.712 0.139 2.96 20.9 637 -- --
9.52 0.144 10.8 -0.235 0.463 -0.407 -- -- 0.155 3.04 18.86 598 -- --
20.54 0.211 10.8 -0.281 -- -0.478 -- 0.216 0.142 -- 19.8 958 -- --
10.48 0.152 10.8 -0.18 0.459 -- -0.0544 -- 0.176 2.85 -- -- -- --
10.49 0.152 10.8 -0.179 0.459 -- -- -- 0.176 2.86 -- -- -- --
20.56 0.211 10.8 -0.268 -- -0.567 -- -- 0.147 -- 19.31 947 -- --
10.89 0.154 10.8 -- 0.448 -0.284 -- -- 0.187 2.93 18.3 549 -- --
22.67 0.223 10.8 -0.159 -- -- -- -- 0.188 -- -- -- -- --
11.33 0.157 10.8 -- 0.456 -- -- -- 0.196 2.86 -- -- -- --
22.16 0.219 10.8 -- -- -0.415 -- -- 0.189 -- 18.75 894 -- --
23.34 0.226 10.8 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 8.69 temperature 15.0 270 > th dose independent rect. 18 13
3 8.71 atmosphere 1010.0 270 < th dose independent rect. 11 11
4 8.75 atmosphere 1010.0 270 < th dose independent rect. 18 13
7 8.83 temperature 15.0 720 > th dose independent rect. 18 5
8 8.83 temperature 15.0 720 > th dose independent rect. 10 13
9 8.84 temperature 15.0 270 > th dose independent rect. 11 11
10 8.85 radiation 1.0 1440 < th dose independent rect. 10 3
12 8.85 radiation 1.0 1440 < th dose dependent rect. 10 3
13 8.86 atmosphere 1010.0 720 < th dose independent rect. 11 4
16 8.87 temperature 30.0 90 < th dose independent rect. 12 11
29 8.92 radiation 1.0 1440 < th dose independent rect. 12 2
33 8.92 radiation 1.0 1440 < th dose dependent rect. 12 2
35 8.93 radiation 1.0 1440 > th dose independent rect. 9 5
42 8.95 atmosphere 1010.0 720 < th dose independent rect. 18 5
64 8.99 atmosphere 1010.0 720 < th dose independent rect. 11 2
74 9.00 humidity 60.0 90 > th dose independent rect. 12 11
77 9.01 radiation 1.0 1440 > th dose independent rect. 12 2
80 9.01 temperature 20.0 30 > th dose independent rect. 12 12
81 9.01 atmosphere 1010.0 10 < th dose independent rect. 12 12
83 9.01 atmosphere 995.0 30 > th dose dependent rect. 12 11
88 9.02 temperature 15.0 720 > th dose independent rect. 11 19
97 9.04 atmosphere 995.0 30 > th dose dependent rect. 23 13
99 9.05 temperature 30.0 270 < th dose independent rect. 12 9
103 9.05 temperature 20.0 720 < th dose dependent rect. 13 16
120 9.07 atmosphere 1000.0 30 > th dose independent rect. 12 11
127 9.08 atmosphere 1010.0 270 < th dose independent sin 19 NA
149 9.10 atmosphere 1010.0 30 < th dose independent sin 17 NA
166 9.11 temperature 15.0 1440 > th dose independent rect. 6 3
171 9.11 temperature 15.0 720 > th dose independent rect. 13 14
174 9.11 temperature 15.0 720 > th dose independent rect. 5 17
176 9.11 temperature 15.0 270 > th dose independent rect. 10 22
177 9.11 temperature 20.0 720 < th dose dependent sin 14 NA
178 9.11 humidity 50.0 30 > th dose dependent rect. 12 11
216 9.14 temperature 30.0 270 < th dose independent rect. 2 17
219 9.14 precipitation 0.1 4320 > th dose independent rect. 23 19
221 9.14 temperature 15.0 270 > th dose independent rect. 6 23
228 9.15 temperature 15.0 720 > th dose independent rect. 10 5
230 9.15 temperature 15.0 1440 > th dose independent rect. 4 10
239 9.15 precipitation 0.1 4320 < th dose independent rect. 23 19
241 9.15 atmosphere 1005.0 90 > th dose dependent rect. 23 6
247 9.15 precipitation 0.1 4320 < th dose dependent rect. 23 19
259 9.16 radiation 10.0 270 < th dose dependent rect. 15 16
263 9.17 temperature 15.0 720 > th dose independent sin 18 NA
266 9.17 temperature 20.0 720 > th dose independent rect. 12 1
283 9.17 atmosphere 1010.0 270 < th dose independent rect. 10 22
297 9.18 temperature 15.0 90 > th dose independent sin 9 NA
299 9.18 temperature 15.0 720 > th dose independent sin 16 NA
300 9.18 temperature 15.0 90 > th dose independent sin 17 NA
304 9.18 radiation 1.0 270 > th dose independent sin 0 NA
305 9.18 precipitation 0.1 14400 < th dose independent rect. 19 1
307 9.18 temperature 15.0 1440 > th dose independent rect. 6 6
311 9.18 temperature 15.0 1440 > th dose independent rect. 4 12
312 9.18 temperature 15.0 10 > th dose independent rect. 18 14
316 9.18 precipitation 0.1 14400 < th dose dependent rect. 19 1
332 9.19 temperature 15.0 270 > th dose independent sin 1 NA
334 9.19 precipitation 0.1 14400 > th dose independent rect. 19 1
337 9.19 temperature 15.0 1440 > th dose independent rect. 4 8
338 9.19 humidity 60.0 270 > th dose independent rect. 12 9
339 9.19 temperature 15.0 720 > th dose independent rect. 15 10
347 9.19 temperature 15.0 270 > th dose independent rect. 1 22
354 9.19 humidity 50.0 30 > th dose dependent rect. 5 18
355 9.19 precipitation 0.1 4320 > th dose dependent rect. 23 19
362 9.20 temperature 15.0 90 > th dose independent sin 23 NA
363 9.20 humidity 60.0 720 > th dose independent rect. 11 2
368 9.20 temperature 15.0 1440 > th dose independent rect. 6 10
377 9.20 temperature 30.0 270 < th dose independent rect. 12 19
379 9.20 humidity 90.0 14400 > th dose dependent rect. 21 1
380 9.20 precipitation 0.1 14400 > th dose dependent rect. 19 1
411 9.21 atmosphere 1010.0 270 < th dose independent rect. 1 22
412 9.21 atmosphere 1005.0 270 > th dose dependent rect. 23 2
416 9.21 atmosphere 995.0 43200 < th dose dependent rect. 13 12
420 9.21 precipitation 0.1 4320 > th dose dependent rect. 1 17
439 9.22 temperature 15.0 1440 > th dose independent rect. 6 8
448 9.22 temperature 30.0 270 < th dose independent rect. 17 14
449 9.22 humidity 70.0 270 > th dose independent rect. 17 14
460 9.22 temperature 15.0 30 > th dose independent rect. 12 20
487 9.23 radiation 1.0 270 > th dose independent rect. 7 12
522 9.23 atmosphere 1015.0 270 < th dose dependent rect. 17 14
532 9.24 atmosphere 1010.0 270 < th dose independent sin 12 NA
540 9.24 precipitation 0.1 1440 > th dose independent rect. 7 11
557 9.24 temperature 30.0 270 < th dose independent rect. 10 22
572 9.25 temperature 15.0 10 > th dose independent sin 7 NA
574 9.25 temperature 15.0 10 > th dose independent sin 9 NA
604 9.25 temperature 15.0 10 > th dose independent sin 1 NA
616 9.25 humidity 90.0 14400 > th dose independent rect. 21 1
624 9.25 precipitation 0.1 1440 > th dose independent rect. 5 13
643 9.25 humidity 90.0 14400 > th dose dependent rect. 9 1
654 9.26 temperature 15.0 1440 > th dose independent rect. 4 5
676 9.26 atmosphere 995.0 43200 < th dose independent rect. 23 18
694 9.26 atmosphere 995.0 270 > th dose dependent rect. 21 13
710 9.27 atmosphere 1000.0 14400 < th dose independent rect. 4 1
727 9.27 atmosphere 995.0 43200 > th dose independent rect. 23 17
729 9.27 wind 7.0 720 < th dose independent rect. 15 18
742 9.27 atmosphere 995.0 43200 < th dose independent rect. 16 23
749 9.27 atmosphere 1005.0 270 > th dose dependent rect. 21 12
762 9.27 temperature 20.0 720 < th dose dependent rect. 1 23
775 9.28 wind 9.0 30 < th dose independent rect. 23 13
777 9.28 precipitation 0.1 30 < th dose independent rect. 23 13
789 9.28 atmosphere 1010.0 720 < th dose independent rect. 5 17
813 9.28 temperature 20.0 720 < th dose dependent no NA NA
814 9.28 precipitation 0.1 4320 > th dose dependent sin 3 NA
817 9.28 radiation 10.0 4320 < th dose dependent rect. 24 5
822 9.28 precipitation 0.1 1440 > th dose dependent rect. 5 13
823 9.28 precipitation 0.1 30 < th dose dependent rect. 23 13
835 9.29 atmosphere 1015.0 1440 > th dose independent rect. 24 2
839 9.29 radiation 1.0 4320 < th dose independent rect. 24 5
840 9.29 radiation 20.0 14400 < th dose independent rect. 24 6
842 9.29 atmosphere 1015.0 1440 < th dose independent rect. 2 7
851 9.29 temperature 15.0 1440 > th dose independent rect. 14 12
856 9.29 precipitation 0.1 1440 < th dose independent rect. 6 13
886 9.29 atmosphere 995.0 43200 < th dose independent rect. 7 20
892 9.29 temperature 15.0 720 > th dose independent rect. 18 21
920 9.29 atmosphere 1015.0 1440 > th dose dependent rect. 24 1
924 9.29 humidity 90.0 1440 > th dose dependent rect. 8 11
926 9.29 precipitation 0.1 1440 > th dose dependent rect. 7 11
929 9.29 precipitation 0.1 1440 < th dose dependent rect. 6 13
946 9.30 precipitation 0.1 1440 > th dose independent rect. 9 9
967 9.30 temperature 10.0 30 > th dose independent rect. 23 13
969 9.30 temperature 10.0 1440 > th dose independent rect. 24 13
972 9.30 atmosphere 995.0 30 > th dose independent rect. 23 13
974 9.30 atmosphere 995.0 1440 > th dose independent rect. 24 13
978 9.30 radiation 1.0 720 < th dose independent rect. 3 15