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Os01g0563000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0376) R2 : 0.789
β1 : -1.38 (0.152) R2dD : 0.0868 R2D : -0.0134
β2 : 1.99 (0.0728) R2dC : 0.342 R2C : 0.162
β3 : -2.48 (0.234) R2dE : 0.178 R2E : -0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.3 (0.595) R2dD*E : 0.655 R2D*E : -0.00683
γ1 : 0.101 (0.0645) R2dN8 : 0.00139 R2N8 : -0.175
σ : 0.522
deviance : 125.47
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C
peak time of C : 17.4
E
wheather : radiation
threshold : 9.939
memory length : 4272
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.5
open length of G : 14.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.08 0.525 11.5 -1.34 1.99 -2.5 0.823 -13.3 0.0868 17.5 9.957 4286 16.5 14.2
235.28 0.714 11.1 -1.44 1.86 -1.23 1.11 -- 0.0687 17.1 10.62 9850 16.4 14.4
125.47 0.522 11.5 -1.38 1.99 -2.48 -- -13.3 0.101 17.4 9.939 4272 16.5 14.1
212.44 0.679 10.9 -1.4 1.8 -1.37 -- -- 0.0687 16.9 10.02 10006 16.4 13.6
218.68 0.689 11.3 -0.702 -- -3.73 -- -13.1 0.342 -- 9.46 16611 16.6 13.9
264.94 0.763 10.9 -1.73 1.92 -- 0.835 -- 0.648 18.1 -- -- -- --
266.59 0.765 10.9 -1.73 1.93 -- -- -- 0.651 18 -- -- -- --
282.95 0.783 10.9 -1.62 -- -1.49 -- -- 0.327 -- 20.12 7888 16.6 14.7
266.12 0.76 10.9 -- 1.85 -1.37 -- -- 0.339 16.9 10.25 9992 16.4 13.8
458.82 1 10.8 -1.79 -- -- -- -- 0.608 -- -- -- -- --
345.92 0.87 10.8 -- 1.95 -- -- -- 0.845 18 -- -- -- --
335.05 0.853 10.8 -- -- -2.73 -- -- 0.656 -- 29.64 38074 17 14.4
543.42 1.09 10.8 -- -- -- -- -- 0.806 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.12 radiation 1 43200 > th dose independent rect. 18 11
2 120.63 radiation 1 43200 < th dose independent rect. 18 11
3 120.91 radiation 1 43200 > th dose independent rect. 18 1
13 122.60 radiation 1 43200 < th dose independent rect. 18 7
17 122.72 radiation 1 43200 < th dose independent rect. 18 5
20 122.78 radiation 1 43200 < th dose independent rect. 18 2
23 124.74 radiation 10 14400 < th dose dependent rect. 18 11
24 125.66 radiation 10 4320 < th dose dependent rect. 18 7
28 126.14 humidity 90 14400 < th dose independent rect. 22 5
29 126.38 radiation 1 14400 < th dose dependent rect. 18 5
31 126.39 radiation 1 14400 < th dose dependent rect. 18 2
41 126.60 humidity 90 14400 < th dose independent rect. 24 1
61 127.15 radiation 1 14400 < th dose dependent rect. 18 13
70 127.45 radiation 30 14400 > th dose independent rect. 16 16
95 128.29 radiation 1 14400 < th dose independent rect. 18 13
148 130.20 radiation 1 14400 > th dose independent rect. 18 13
169 130.78 radiation 1 14400 < th dose dependent sin 10 NA
174 130.99 radiation 1 14400 < th dose dependent rect. 4 3
179 131.13 radiation 1 14400 < th dose dependent rect. 21 10
194 131.40 radiation 1 14400 > th dose dependent rect. 18 1
211 131.43 radiation 30 14400 > th dose independent rect. 7 1
245 131.78 humidity 90 43200 > th dose independent rect. 5 2
250 132.01 humidity 90 43200 > th dose dependent rect. 5 7
254 132.06 humidity 90 43200 > th dose dependent rect. 5 5
255 132.09 humidity 90 43200 > th dose dependent rect. 5 2
332 132.93 humidity 90 43200 > th dose independent rect. 5 5
343 133.03 atmosphere 1005 43200 > th dose independent rect. 16 1
371 133.20 atmosphere 1005 43200 < th dose independent rect. 17 1
378 133.25 humidity 90 14400 > th dose independent rect. 22 5
395 133.38 radiation 1 14400 < th dose independent sin 10 NA
470 133.97 radiation 1 14400 > th dose independent sin 10 NA
471 133.97 radiation 1 14400 < th dose independent rect. 5 3
492 134.16 radiation 1 14400 > th dose independent rect. 5 3
514 134.32 radiation 1 14400 < th dose dependent rect. 4 19
517 134.33 radiation 1 14400 < th dose dependent rect. 4 15
548 134.41 radiation 1 14400 < th dose dependent rect. 21 22
551 134.42 radiation 1 14400 < th dose dependent no NA NA
568 134.53 radiation 1 14400 < th dose dependent rect. 9 23
597 134.78 wind 3 43200 > th dose dependent rect. 9 5
604 134.81 radiation 1 14400 < th dose independent rect. 20 13
609 134.85 humidity 90 43200 < th dose independent rect. 5 6
620 134.86 radiation 1 14400 < th dose independent rect. 24 9
697 135.24 humidity 90 43200 > th dose dependent rect. 8 1
723 135.38 humidity 90 43200 > th dose independent rect. 8 2
756 135.59 wind 5 43200 > th dose dependent rect. 5 10
773 135.68 wind 5 43200 > th dose dependent rect. 7 8
863 136.08 wind 7 43200 < th dose independent rect. 5 9
879 136.13 wind 5 43200 > th dose independent rect. 8 7
884 136.15 humidity 90 43200 < th dose independent rect. 8 3
892 136.19 humidity 90 43200 > th dose independent rect. 5 19
906 136.20 radiation 40 14400 < th dose independent rect. 15 18
920 136.26 wind 5 43200 < th dose independent rect. 8 7
929 136.28 humidity 90 43200 > th dose dependent sin 1 NA
931 136.29 humidity 90 43200 < th dose independent rect. 5 18
936 136.32 wind 5 43200 < th dose independent rect. 9 5
982 136.50 wind 5 43200 > th dose independent rect. 5 10
986 136.51 humidity 90 43200 > th dose independent rect. 22 1
992 136.53 wind 7 43200 < th dose independent rect. 2 12