BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0563000 Os01g0563000|AK067665
(422 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563 292 3e-79
AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579 279 2e-75
AT3G55520.1 | chr3:20594177-20595128 FORWARD LENGTH=191 63 3e-10
AT5G48580.1 | chr5:19696156-19697304 REVERSE LENGTH=164 60 3e-09
AT3G54010.1 | chr3:20001042-20005063 FORWARD LENGTH=636 58 9e-09
AT3G25220.1 | chr3:9182691-9184463 FORWARD LENGTH=154 54 2e-07
>AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563
Length = 562
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 221/330 (66%), Gaps = 10/330 (3%)
Query: 75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134
EV+VH+TG L+DGT+F SSR+ P +F LGQ V+ G+++ + +M+ GE A+FTIP+ L
Sbjct: 59 EVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAEL 118
Query: 135 TMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194
++G TL+F++EL+ ++ DI KD G+ KKI+ E +
Sbjct: 119 AYGESGSPPTIPANA----TLQFDVELLKWDSVKDICKDGGVFKKILAVGEK-WENPKDL 173
Query: 195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254
D V VK++A L DGT V KS+GVEF++ DG FCPA AV TMK+GE+ +L VKP+Y FG
Sbjct: 174 DEVLVKFEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFG 233
Query: 255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312
E+G+P+ E AVPP+ATL ++L V W + + +D + KK L+ G+ + AV
Sbjct: 234 EKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEG-AV 292
Query: 313 VKVRLLGKLQDGTVFDRRGYG-DDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371
VKV+L+GKLQDGTVF ++G+G ++EPFEF DE QV+DGLD +VM M++GEVA TI P+
Sbjct: 293 VKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPE 352
Query: 372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401
+AF + S Q + A VP N+TV Y+++LL+
Sbjct: 353 YAFGSNES-QQELAVVPPNSTVTYEVDLLT 381
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 22/254 (8%)
Query: 174 EGILKKIVKNAEPDRKQSHSSDFVFVKYDACLMDGT----SVSKSEGVEFSLTDGFFCPA 229
+G+ KK++K E + + D V V Y L+DGT S ++ +F+L G
Sbjct: 38 QGLKKKLLKEGE-GYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKG 96
Query: 230 FAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIG 287
+ + TMK+GE AV + + A+GE G P +P +ATL + + W ++ I
Sbjct: 97 WDIGIKTMKKGENAVFTIPAELAYGESGSP-----PTIPANATLQFDVELLKWDSVKDIC 151
Query: 288 EDQAIAKKTLRIGNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQV 347
+D + KK L +G V+ V+ KL+DGTV G + EF V +G
Sbjct: 152 KDGGVFKKILAVGEKWENPKDLDEVL-VKFEAKLEDGTVV-----GKSDGVEFTVKDGHF 205
Query: 348 IDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQF-AFVPRNATVVYKIELLSVVNVR 406
L ++V TM++GE T+ PQ+ F G VP NAT+ +EL+S V
Sbjct: 206 CPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVS 265
Query: 407 YYVRITGETSVVHS 420
+T + VV
Sbjct: 266 ---EVTDDNKVVKK 276
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 285 RIGED----QAIAKKTLRIGNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEF 340
++GE+ Q + KK L+ G V +V G L DGT FD PF+F
Sbjct: 29 KVGEEKEIQQGLKKKLLKEGEGYETPENGDEV-EVHYTGTLLDGTKFDS-SRDRATPFKF 86
Query: 341 VVDEGQVIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELL 400
+ +GQVI G D + TM++GE A FTIP + A+ GS +P NAT+ + +ELL
Sbjct: 87 TLGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSP----PTIPANATLQFDVELL 142
Query: 401 SVVNVR 406
+V+
Sbjct: 143 KWDSVK 148
>AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579
Length = 578
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 223/337 (66%), Gaps = 12/337 (3%)
Query: 75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134
EV+VH+TG L+DGT+F SSR+ P +F LGQ V+ G++L + +M+ GE AIFTIP L
Sbjct: 67 EVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPEL 126
Query: 135 TMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194
+ G TL+F++ELIA ++ DI D G+ KKI+ E K
Sbjct: 127 AYGETGSPPTIPPNA----TLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEK-PKDL 181
Query: 195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254
D V+VKY+A L DGT V KS+GVEF++ +G FCPA + AV TMK GE+ +L VKP+Y FG
Sbjct: 182 DEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFG 241
Query: 255 EQGRP-SQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQA 311
E GRP S G +AA+PP+ATL + L V W + + +D+ + KK L+ G + A
Sbjct: 242 EFGRPASDGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEG-A 300
Query: 312 VVKVRLLGKLQDG-TVFDRRGY-GDDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIP 369
+VK++L+GKLQDG TVF ++G+ D+EPFEF +DE QVI+GL+++VM M++GEVA TI
Sbjct: 301 IVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITIS 360
Query: 370 PQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVR 406
P++AF + S Q + A +P N+TV Y++EL+S + +
Sbjct: 361 PEYAFGSSESKQ-ELAVIPPNSTVYYEVELVSFIKEK 396
>AT3G55520.1 | chr3:20594177-20595128 FORWARD LENGTH=191
Length = 190
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 164 MFTIIDIFKDEGILKKIVKNAEPDRKQSHSSDF--VFVKYDACLMDGTSV---SKSEGVE 218
M ID+ D G+LKKIV++A+PD S S D V V Y+ L + V ++ + +
Sbjct: 1 MGDAIDLSGDGGVLKKIVRSAKPD-AISPSDDLPVVDVHYEGILAEDEKVFDTTREDNLV 59
Query: 219 FS--LTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVH 276
FS L G ++ A+ TMK GE A + KP+YA+G G P +PPDATL
Sbjct: 60 FSFELGTGSVIRSWDIALKTMKVGEVAKITCKPEYAYGRAGSPPD-----IPPDATLIFE 114
Query: 277 L-LFVCWIRRIGEDQAIAKKTLRIGNSQR 304
+ L C R+ +++++ R+ + ++
Sbjct: 115 VELVACRPRKGASVGSVSEERARLEDLKK 143
>AT5G48580.1 | chr5:19696156-19697304 REVERSE LENGTH=164
Length = 163
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 290 QAIAKKT-----LRIG-----NSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFE 339
Q AKKT L+IG + + +KV GKL DGTVFD + +PFE
Sbjct: 22 QGFAKKTGDVSELQIGVKFKPKTCEVQAHKGDTIKVHYRGKLTDGTVFDSS-FERGDPFE 80
Query: 340 FVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIEL 399
F + GQVI G D+ ++ GE + IP + + GS +P AT+++ EL
Sbjct: 81 FKLGSGQVIKGWDQGLLGACVGEKRKLKIPAKLGYGEQGSPPT----IPGGATLIFDTEL 136
Query: 400 LSV 402
++V
Sbjct: 137 IAV 139
>AT3G54010.1 | chr3:20001042-20005063 FORWARD LENGTH=636
Length = 635
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 135/352 (38%), Gaps = 32/352 (9%)
Query: 75 EVQVHFTGELVDGTQFVSSREND----IPERFILGQEDVMHGFNLAVSSMQPGEKAIFTI 130
+V H T +DG S+R +P R +LG ++ G + +M GE A+F +
Sbjct: 53 QVIYHCTVRTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKM 112
Query: 131 PSALTMTKAGXXXXXXXXXXXXQTLRFEIELIAMFTIIDIFKDE-GILKKIVKNAEPDRK 189
+ + L FEIEL+ F+ I D+ G++KKI+ E
Sbjct: 113 KPEMHYAEIDCPVSAPENFPKDDELHFEIELLD-FSKAKIASDDLGVIKKILNEGEGWES 171
Query: 190 QSHSSDFVFVKYDACLMDGTSV--SKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIV 247
+ V + A DG + E F+ + TM E+AV+ V
Sbjct: 172 PREPYE-VKARISAKSGDGHVIFSHTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYV 230
Query: 248 KPKYAFGEQGRPSQGEEAAVPPDATLY-----VHLLFVCWIRRIGEDQAIAKKTLRIGNS 302
+ +Y E + D L V L+ +R + D + K+ +R G
Sbjct: 231 RKQYLT---------ESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRG 281
Query: 303 Q-----RIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMT 357
+ + +V +L + +D + +D+P EF EG V +G +
Sbjct: 282 EFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRL 341
Query: 358 MEEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVVNVRYYV 409
M GE+A T PP +A+D + V A V ++IELL R +
Sbjct: 342 MLPGEIALVTCPPDYAYDKF----PRPPGVSEGAHVQWEIELLGFETPRDWT 389
>AT3G25220.1 | chr3:9182691-9184463 FORWARD LENGTH=154
Length = 153
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 313 VKVRLLGKLQDGTVFDRRGYGDDEPFEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQH 372
+KV GKL DGTVFD + +P EF + GQVI G D+ ++ GE + IP +
Sbjct: 55 IKVHYRGKLTDGTVFDSS-FERGDPIEFELGTGQVIPGWDQGLLGACVGEKRKLKIPSKL 113
Query: 373 AFDAVGSDQHQFAFVPRNATVVYKIELLSV 402
+ GS +P AT+++ EL++V
Sbjct: 114 GYGDNGSPPK----IPGGATLIFDTELVAV 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,367,756
Number of extensions: 329090
Number of successful extensions: 691
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 10
Length of query: 422
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 321
Effective length of database: 8,337,553
Effective search space: 2676354513
Effective search space used: 2676354513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)