BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0328700 Os01g0328700|AK066632
(503 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0328700 Dihydrolipoamide dehydrogenase family protein 915 0.0
Os01g0337900 Similar to Dihydrolipoamide dehydrogenase 237 2e-62
Os03g0163300 Similar to Glutathione reductase (Fragment) 174 2e-43
Os02g0813500 Glutathione reductase, cytosolic (EC 1.8.1.7) ... 166 3e-41
Os10g0415300 Similar to Glutathione reductase (Fragment) 142 7e-34
Os05g0160000 Similar to Ferric leghemoglobin reductase 140 2e-33
Os03g0662000 Similar to Dihydrolipoyl dehydrogenase, mitoch... 109 6e-24
Os10g0415112 Similar to Glutathione reductase (Fragment) 100 3e-21
Os08g0151800 Pyridine nucleotide-disulphide oxidoreductase,... 70 3e-12
>Os01g0328700 Dihydrolipoamide dehydrogenase family protein
Length = 503
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/480 (95%), Positives = 457/480 (95%)
Query: 24 GVSALRASYXXXXXXXXXXXXXXXXXXXXXXXIKAAQLGLKTTCIEKRGTLGGTCLNVGC 83
GVSALRASY IKAAQLGLKTTCIEKRGTLGGTCLNVGC
Sbjct: 24 GVSALRASYAAVAGEESDVVVVGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGC 83
Query: 84 IPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPAMMAQKDKAVAGLTKGIEGLFKKNK 143
IPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPAMMAQKDKAVAGLTKGIEGLFKKNK
Sbjct: 84 IPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPAMMAQKDKAVAGLTKGIEGLFKKNK 143
Query: 144 VTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIATGSDVKSLPGVTIDEKKIVSSTGA 203
VTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIATGSDVKSLPGVTIDEKKIVSSTGA
Sbjct: 144 VTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIATGSDVKSLPGVTIDEKKIVSSTGA 203
Query: 204 LCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFAPDIVPSMDGEVRKQFQRMLEK 263
LCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFAPDIVPSMDGEVRKQFQRMLEK
Sbjct: 204 LCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFAPDIVPSMDGEVRKQFQRMLEK 263
Query: 264 QKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSVIEADIVLVSAGRVPYTAGIGLESVG 323
QKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSVIEADIVLVSAGRVPYTAGIGLESVG
Sbjct: 264 QKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSVIEADIVLVSAGRVPYTAGIGLESVG 323
Query: 324 VETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLAHKAEEDGVACVEFIAGKEGHVDYDT 383
VETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLAHKAEEDGVACVEFIAGKEGHVDYDT
Sbjct: 324 VETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLAHKAEEDGVACVEFIAGKEGHVDYDT 383
Query: 384 VPGVVYTHPEVASVGKTEEQVKALGIPYRVGKFPLLANSRAKAIDDAEGLVKVVAEKETD 443
VPGVVYTHPEVASVGKTEEQVKALGIPYRVGKFPLLANSRAKAIDDAEGLVKVVAEKETD
Sbjct: 384 VPGVVYTHPEVASVGKTEEQVKALGIPYRVGKFPLLANSRAKAIDDAEGLVKVVAEKETD 443
Query: 444 KILGVHIMAPGAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKEACLQTFTKAIHI 503
KILGVHIMAPGAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKEACLQTFTKAIHI
Sbjct: 444 KILGVHIMAPGAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKEACLQTFTKAIHI 503
>Os01g0337900 Similar to Dihydrolipoamide dehydrogenase
Length = 561
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 238/455 (52%), Gaps = 24/455 (5%)
Query: 56 IKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKSSFAHH----GVKFS 111
+ A + GLKT IE +GGTC+N GC+PSKALL S E + HH G++ S
Sbjct: 91 LHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQDE--HHMKSLGLQVS 147
Query: 112 NLEVDLPAMMAQKDKAVAGLTKGIEGLFKKNKVTYVKGFGKLASPSEVSVDLSDGGSTVV 171
D A+ + + + + K V + GFG + +V +
Sbjct: 148 TAGYDRQAVADHANNLASKIRSNLTNSMKALGVDILTGFGTIVGKQKVRYGKVGFPDNEI 207
Query: 172 KGKNIIIATGSDVKSLP-GVTIDEKKIVSSTGALCLSEIPKKLVVIGAGYIGLEMGSVWN 230
+NIIIATGS V +P G+ ID K + +S AL L +P + ++G+GYIGLE V+
Sbjct: 208 TARNIIIATGS-VPFVPNGIEIDGKTVFTSDHALKLESVPDWIAIVGSGYIGLEFSDVYT 266
Query: 231 RLGSEVTVVEFAPDIVPSMDGEVRKQFQRML-EKQKMKFMLKTKVVGVDTSGDGVKLTLE 289
LGSEVT VE ++P D E+ K QR+L +K+ + + + DG + +E
Sbjct: 267 ALGSEVTFVEALDQLMPGFDPEIAKLAQRILINPRKIDYHTGVFASKITPAKDGKPVLIE 326
Query: 290 ---PAAGGEQSVIEADIVLVSAGRVPYTAGIGLESVGVETDKAGRILVDKRFM------T 340
+ +E D L++ GR P+T G+GLE+V V T + G + VD+R
Sbjct: 327 LIDAKTKEHKETLEVDAALIATGRAPFTKGLGLENVNVVTQR-GFVPVDERMQVMDADGN 385
Query: 341 NVNGVYAIGDAIPGPMLAHKAEEDGVACVEFIAGKEGHVDYDTVPGVVYTHPEVASVGKT 400
V +Y IGDA MLAH A G++ VE I+GK+ +++ ++P +THPE++ VG T
Sbjct: 386 AVPNLYCIGDANGKLMLAHAASAQGISVVERISGKDNILNHLSIPAACFTHPEISMVGLT 445
Query: 401 EEQVKAL----GIPYRVGKFPLLANSRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAG 456
E Q + G V K AN++A A ++ +GL K++ +T +ILGVHI+ A
Sbjct: 446 EPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKMIYRPDTGEILGVHILGLHAA 505
Query: 457 EIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 491
++IHEA A+ G +DI HAHPT+SE L E
Sbjct: 506 DLIHEASNAIALGTRVQDIKFAVHAHPTLSEVLDE 540
>Os03g0163300 Similar to Glutathione reductase (Fragment)
Length = 555
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 214/435 (49%), Gaps = 20/435 (4%)
Query: 60 QLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPA 119
++ T + G +GGTC+ GC+P K L++ S HE + S V ++ + D
Sbjct: 108 EMPFATVASDDLGGVGGTCVLRGCVPKKLLVYGSKYSHEFEESHGFGWVYETDPKHDWNT 167
Query: 120 MMAQKDKAVAGLTKGIEGLFKKNKVTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIA 179
++A K+ + L + + + VT ++G GK+ P VSVD + +NI+IA
Sbjct: 168 LIANKNTELQRLVGIYKNILNNSGVTLIEGRGKIVDPHTVSVD-----GKLYTARNILIA 222
Query: 180 TG--SDVKSLPGVTIDEKKIVSSTGALCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVT 237
G + ++PG+ + ++ S AL L P+K+ ++G GYI LE ++N L SEV
Sbjct: 223 VGGRPSMPNIPGI----EHVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSEVH 278
Query: 238 VVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQS 297
V ++ D EVR + + + F + + S DG+ L+L+ +++
Sbjct: 279 VFIRQKKVLRGFDEEVRDFIAEQMSLRGITFHTEQSPQAITKSNDGL-LSLKT---NKET 334
Query: 298 VIEADIVLVSAGRVPYTAGIGLESVGVETDKAGRILVDKRFMTNVNGVYAIGDAIPGPML 357
+ V+ + GR P T +GLE VGV+ DK G I+VD+ T+V+ ++A+GD L
Sbjct: 335 IGGFSHVMFATGRKPNTKNLGLEEVGVKLDKNGAIMVDEYSRTSVDSIWAVGDVTDRVNL 394
Query: 358 AHKAEEDGVACVEFIAGKE-GHVDYDTVPGVVYTHPEVASVGKTEEQ-VKALG-IPYRVG 414
A +G A + + G E DY VP V++ P + VG TEEQ ++ G +
Sbjct: 395 TPVALMEGGAFAKTVFGDEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDIYTA 454
Query: 415 KFPLLANSRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSED 474
F L + + D +K++ T+K++GVH+ A EII +A++ G + +D
Sbjct: 455 NFRPLRATLSGLPDRI--FMKLIVCATTNKVVGVHMCGEDAPEIIQGVAIAVKAGLTKQD 512
Query: 475 IARTCHAHPTVSEAL 489
T HPT +E
Sbjct: 513 FDATIGIHPTSAEEF 527
>Os02g0813500 Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase)
Length = 496
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 214/440 (48%), Gaps = 21/440 (4%)
Query: 69 EKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPAMMAQKDKAV 128
+ +G GGTC+ GC+P K L++ S E + + ++ + ++ K + +
Sbjct: 61 DWQGGHGGTCVIRGCVPKKILVYGSSFRGEFEDAKNFGWEINGDINFNWKRLLENKTQEI 120
Query: 129 AGLTKGIEGLFKKNKVTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIATGSDVK--S 186
L + + + VT ++G G L V V DG K+I+IATGS + +
Sbjct: 121 VRLNGVYQRILGNSGVTMIEGAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRVN 180
Query: 187 LPGVTIDEKKIVSSTGALCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFAPDIV 246
+PG ++ ++S AL L E+PK+ V++G GYI +E S+W +G+ V + +
Sbjct: 181 IPG----KELAITSDEALSLEELPKRAVILGGGYIAVEFASIWKGMGAHVDLFYRKELPL 236
Query: 247 PSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSVIEADIVLV 306
D E+R LE + ++ T + + + DG+K+ + GE+ I AD+VL
Sbjct: 237 RGFDDEMRTVVASNLEGRGIRLHPGTNLSELSKTADGIKVVTDK---GEE--IIADVVLF 291
Query: 307 SAGRVPYTAGIGLESVGVETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLAHKAEEDGV 366
+ GR P + + LE+ GVE D G I VD T+V ++A+GD L A +
Sbjct: 292 ATGRTPNSQRLNLEAAGVEVDNIGAIKVDDYSRTSVPNIWAVGDVTNRINLTPVALMEAT 351
Query: 367 ACVEFI-AGKEGHVDYDTVPGVVYTHPEVASVGKTEEQ----VKALGIPYRVGKFPLLAN 421
+ + G+ DY VP V++ P ++ VG +E+Q K+ + Y F + N
Sbjct: 352 CFSKTVFGGQPTKPDYRDVPCAVFSIPPLSVVGLSEQQALEEAKSDVLVY-TSSFNPMKN 410
Query: 422 SRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSEDIARTCHA 481
S +K + ++K+V + ETDK+LG + P A EII +AL+ GA+ T
Sbjct: 411 SISKRQEKT--VMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKATFDSTVGI 468
Query: 482 HPTVSEALKEACLQTFTKAI 501
HP+ +E ++T T+ +
Sbjct: 469 HPSAAEEF--VTMRTLTRRV 486
>Os10g0415300 Similar to Glutathione reductase (Fragment)
Length = 387
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 176/374 (47%), Gaps = 20/374 (5%)
Query: 121 MAQKDKAVAGLTKGIEGLFKKNKVTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIAT 180
M K+ + L + K + VT ++G GK+ P VSVD + KNI+IA
Sbjct: 1 MTNKNLELQRLVGVQTNMLKNSGVTIIEGRGKVVDPHTVSVD-----GKLYTAKNILIAV 55
Query: 181 G--SDVKSLPGVTIDEKKIVSSTGALCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTV 238
G + +PG+ + ++ S AL L P+K+ ++G GYI LE ++N L S V V
Sbjct: 56 GGRPSMPDIPGI----EHVIDSDAALDLPSRPEKIAIVGGGYIALEFAGIFNGLKSGVHV 111
Query: 239 VEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSV 298
++ D EVR + + + F + V S DG+ LTL G S+
Sbjct: 112 FIRQKKVLRGFDEEVRDFVADQMSLRGITFHTEETPQAVMKSDDGL-LTLTTNKG---SI 167
Query: 299 IEADIVLVSAGRVPYTAGIGLESVGVETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLA 358
V+ + GR P T +GLE VGV+ DK G I+VD+ T+V+ ++A+GD L
Sbjct: 168 NGFSHVMFATGRKPNTKNLGLEEVGVKMDKHGAIVVDEFSRTSVDSIWAVGDVTNRVNLT 227
Query: 359 HKAEEDGVACVEFIAGKE-GHVDYDTVPGVVYTHPEVASVGKTEEQV--KALGIPYRVGK 415
A +G A I G E DY VP V++ P + VG TEE+ K +
Sbjct: 228 PVALMEGGALARTIFGNEPTKPDYSAVPSAVFSQPPIGQVGLTEEKAIEKYGDVDVYTSN 287
Query: 416 FPLLANSRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSEDI 475
F L + + D +KV+ T+K+LGVH+ A EII +A++ G ++
Sbjct: 288 FRPLRATLSGLPDRV--YMKVIVCANTNKVLGVHVCGEDAPEIIQGIAIAVKAGLMKQNF 345
Query: 476 ARTCHAHPTVSEAL 489
T HPT +E L
Sbjct: 346 DATIGVHPTTAEEL 359
>Os05g0160000 Similar to Ferric leghemoglobin reductase
Length = 72
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 70/72 (97%)
Query: 432 GLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 491
GLVKVVAEKETD+ILGVHIMAP AGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE
Sbjct: 1 GLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 60
Query: 492 ACLQTFTKAIHI 503
ACLQT+ KAIHI
Sbjct: 61 ACLQTYLKAIHI 72
>Os03g0662000 Similar to Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC
1.8.1.4) (Glycine cleavage system L protein)
(Dihydrolipoamide dehydrogenase)
Length = 82
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 230 NRLGSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLE 289
R SEV+VVEFA DIVPSMDG++RK F+ MLEKQKMKFMLKT VVGVD SG VKLT+E
Sbjct: 6 ERARSEVSVVEFASDIVPSMDGQIRKPFKHMLEKQKMKFMLKTMVVGVDASGSCVKLTVE 65
Query: 290 PAAGGEQSVIE 300
PAAGGEQS+++
Sbjct: 66 PAAGGEQSILD 76
>Os10g0415112 Similar to Glutathione reductase (Fragment)
Length = 493
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 171/432 (39%), Gaps = 87/432 (20%)
Query: 60 QLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKSSFAHHGVKFSNLEVDLPA 119
++ T + G +GGTC+ GC+P K L+++S HE + S + + D
Sbjct: 119 EMPFATVASDSLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESHGFGWRYGTEPKHDWST 178
Query: 120 MMAQKDKAVAGLTKGIEGLFKKNKVTYVKGFGKLASPSEVSVDLSDGGSTVVKGKNIIIA 179
+M K+ + L + K + VT ++G GKL +++
Sbjct: 179 LMTNKNLELQRLVGVQTNMLKNSGVTIIEGRGKL----------------------VVVH 216
Query: 180 TGSDVKSLPGVTIDEKKIVSSTGALCLSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVV 239
+ D+ PG+ + ++ S +L L P+K+ ++G GYI LE ++N L S V V
Sbjct: 217 SMPDI---PGI----EHVIDSDASLDLPSRPEKIAIVGGGYIALEFAGIFNGLKSGVHVF 269
Query: 240 EFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAAGGEQSVI 299
++ D EVR + + + F + V S DG+ LTL G
Sbjct: 270 IRQKKVLRGFDEEVRDFVADQMSLRGITFHTEETPQAVMKSDDGL-LTLTTNKGSING-- 326
Query: 300 EADIVLVSAGRVPYTAGIGLESVGVETDKAGRILVDKRFMTNVNGVYAIGDAIPGPMLAH 359
++ +GLE VGV+ DK G I+
Sbjct: 327 -------------FSHNLGLEEVGVKMDKHGAIV-------------------------- 347
Query: 360 KAEEDGVACVEFIAGKEGHVDYDTVPGVVYTHPEVASVGKTEEQV--KALGIPYRVGKFP 417
E D G ++ VP V++ P + VG TEE+ K + F
Sbjct: 348 -GELD-----------TGCINGSAVPSAVFSQPPIGQVGLTEEKAIEKYGDVDVYTSNFR 395
Query: 418 LLANSRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSEDIAR 477
L + + D +KV+ T+K+LGVH+ A EII +A++ G ++
Sbjct: 396 PLRATLSGLPDRV--YMKVIVCANTNKVLGVHVCGEDAPEIIQGIAIAVKAGLMKQNFDA 453
Query: 478 TCHAHPTVSEAL 489
T HPT +E L
Sbjct: 454 TIGVHPTTAEEL 465
>Os08g0151800 Pyridine nucleotide-disulphide oxidoreductase, class I family
protein
Length = 491
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 170 VVKGKNIIIATGSDVK--------SLPGV-----TIDEKKIVSSTGALCLSEIPKKLVVI 216
++K ++II+TG + +LPGV D +VSS G KK+VVI
Sbjct: 162 ILKYGSLIISTGCEASRLPAKIGGNLPGVHYIRDVADADSLVSSLGKA------KKIVVI 215
Query: 217 GAGYIGLEMGSV---WNRLGSEVTVVEFAPDIVPSM-DGEVRKQFQRMLEKQKMKFMLKT 272
G GYIG+E+ + WN + T++ I+P + + K+++ + ++ +KF+
Sbjct: 216 GGGYIGMEVAAAACGWNL---DTTIIFPEDHIMPRLFTPSLAKKYEELYQQNGVKFIKGA 272
Query: 273 KVVGVDTSGDGVKLTLEPAAGGEQSVIEADIVLVSAGRVPYTAGIG-LESVGVETDKAGR 331
+ ++ DG + A + SV+EAD V+V G P IG E+VGV T K G
Sbjct: 273 LIDKLEAGSDG---RVSSAVLEDGSVVEADTVIVGIGARPV---IGPFEAVGVNT-KVGG 325
Query: 332 ILVDKRFMTNVNGVYAIGDAIPGPM 356
I VD F T++ G++AIGD P+
Sbjct: 326 IEVDSLFRTSIPGIFAIGDVAAFPL 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,969,224
Number of extensions: 629682
Number of successful extensions: 1662
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 11
Length of query: 503
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 398
Effective length of database: 11,553,331
Effective search space: 4598225738
Effective search space used: 4598225738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)