Os01g0337900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydrolipoamide dehydrogenase.
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Os01g0337900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydrolipoamide dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.36 | 0.323 | 11.6 | 0.357 | 0.744 | 0.628 | -0.15 | 0.525 | -0.13 | 21 | 26.4 | 238 | -- | -- |
| 47.66 | 0.322 | 11.6 | 0.229 | 0.669 | 0.705 | -0.165 | -- | -0.183 | 21 | 26.47 | 298 | -- | -- |
| 47.27 | 0.32 | 11.6 | 0.359 | 0.717 | 0.641 | -- | 0.522 | -0.135 | 20.9 | 26.5 | 264 | -- | -- |
| 47.71 | 0.322 | 11.6 | 0.23 | 0.651 | 0.696 | -- | -- | -0.196 | 20.9 | 26.38 | 312 | -- | -- |
| 62.95 | 0.37 | 11.6 | 0.294 | -- | 0.965 | -- | 0.744 | -0.214 | -- | 26.3 | 437 | -- | -- |
| 65.36 | 0.379 | 11.6 | 0.439 | 1.06 | -- | 0.35 | -- | 0.00855 | 19.1 | -- | -- | -- | -- |
| 65.67 | 0.379 | 11.6 | 0.431 | 1.06 | -- | -- | -- | 0.00907 | 19.2 | -- | -- | -- | -- |
| 62.67 | 0.369 | 11.6 | 0.133 | -- | 1.03 | -- | -- | -0.282 | -- | 26.4 | 438 | -- | -- |
| 49.03 | 0.326 | 11.7 | -- | 0.626 | 0.749 | -- | -- | -0.234 | 21.1 | 26.36 | 316 | -- | -- |
| 124.76 | 0.522 | 11.6 | 0.412 | -- | -- | -- | -- | -0.00951 | -- | -- | -- | -- | -- |
| 70.57 | 0.393 | 11.6 | -- | 1.05 | -- | -- | -- | -0.039 | 19.2 | -- | -- | -- | -- |
| 63.03 | 0.37 | 11.7 | -- | -- | 1.04 | -- | -- | -0.322 | -- | 26.25 | 438 | -- | -- |
| 129.23 | 0.531 | 11.6 | -- | -- | -- | -- | -- | -0.0552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.46 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 5 | 45.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 16 | 45.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 44 | 46.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 49 | 46.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 61 | 46.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 74 | 46.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 96 | 46.90 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 106 | 46.96 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 157 | 47.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 191 | 47.37 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 229 | 47.52 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 330 | 47.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 391 | 47.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 462 | 48.09 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 469 | 48.12 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 477 | 48.13 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 535 | 48.24 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 14 |
| 537 | 48.25 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 599 | 48.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 600 | 48.37 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 674 | 48.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 682 | 48.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 761 | 48.67 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 784 | 48.71 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 16 |
| 876 | 48.88 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 883 | 48.89 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 912 | 48.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |