BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0286900 Os01g0286900|AK103865
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0286900 Similar to Auxin-responsive protein IAA31 (Ind... 165 9e-42
Os02g0723400 AUX/IAA protein family protein 105 6e-24
Os08g0109400 AUX/IAA protein family protein 70 3e-13
Os02g0817600 AUX/IAA protein family protein 69 6e-13
Os03g0742900 Aux /IAA protein 68 1e-12
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 65 7e-12
Os02g0805100 Similar to Auxin-responsive protein IAA12 (Ind... 64 3e-11
>Os01g0286900 Similar to Auxin-responsive protein IAA31 (Indoleacetic
acid-induced protein 31)
Length = 115
Score = 165 bits (417), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 80/96 (83%)
Query: 20 TLFVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITYADVMECHQQVPGQKAAHV 79
TLFVKVYMEGVPIGRK CHMFKTPITYADVMECHQQVPGQKAAHV
Sbjct: 20 TLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMECHQQVPGQKAAHV 79
Query: 80 LTYEDQDGDWMMVGDVPWELFLSSVKKLRIARMDKC 115
LTYEDQDGDWMMVGDVPWELFLSSVKKLRIARMDKC
Sbjct: 80 LTYEDQDGDWMMVGDVPWELFLSSVKKLRIARMDKC 115
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 20 TLFVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITYADVMECHQQ-----VPGQ 74
+LFVKVYMEGVPIGRK MF+ ITY CH+Q +
Sbjct: 103 SLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITY---HHCHRQFAVVGMKTN 159
Query: 75 KAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIARMD 113
K HVLTYEDQ+GDWMM GDVPWELFL+SVK+LRIAR D
Sbjct: 160 KVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARAD 198
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 20 TLFVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMF----KTPITYADVMECHQQVPGQK 75
T+FVKV +EG +GRK MF I D E Q G K
Sbjct: 143 TMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRD-NELQQMEEGSK 201
Query: 76 AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 111
+VL YED +GD M+VGDVPWELF++SVK+L IA+
Sbjct: 202 KRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQ 237
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 22 FVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITY--ADVMECHQQVPGQKAAHV 79
+VKV M+G IGRK MF P A ++ A +
Sbjct: 164 WVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNSAEYQ 223
Query: 80 LTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 111
LTYED+DGDWM+VGDVPWE+F+SSVK+LRI R
Sbjct: 224 LTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMR 255
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 20 TLFVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITYADVMECHQQVPGQKAAHV 79
+ FVKV M+G P RK MF T + M +V G A V
Sbjct: 131 SAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNM---NEVNGSDA--V 185
Query: 80 LTYEDQDGDWMMVGDVPWELFLSSVKKLRI 109
TYED+DGDWM+VGDVPW++F+ S K+LRI
Sbjct: 186 TTYEDKDGDWMLVGDVPWQMFVESCKRLRI 215
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 21 LFVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITYADVMECHQQVPGQKAAHVL 80
L+VKV M+G P RK MF I ++ E + + +VL
Sbjct: 159 LYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMF---IGFSTGKEGAENQ--KDGEYVL 213
Query: 81 TYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 111
TYED+DGDWM+VGDVPWE+F S ++LRI +
Sbjct: 214 TYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK 244
>Os02g0805100 Similar to Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) (BODENLOS protein)
Length = 182
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 22 FVKVYMEGVPIGRKXXXXXXXXXXXXXXXXCHMFKTPITYADVMECHQQVPGQKAAHVLT 81
+VKV EG IGRK MF T + + G A V+T
Sbjct: 94 YVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDD-HGDAAGPVVT 152
Query: 82 YEDQDGDWMMVGDVPWELFLSSVKKLRI 109
YED DGDWM+VGDVPW+ F SVK+L+I
Sbjct: 153 YEDGDGDWMLVGDVPWDDFARSVKRLKI 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,568,162
Number of extensions: 77102
Number of successful extensions: 219
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 7
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)