BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0279700 Os01g0279700|AK100107
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0279700 Major facilitator superfamily protein 872 0.0
Os09g0570400 Major facilitator superfamily protein 711 0.0
Os05g0451100 Major facilitator superfamily protein 307 1e-83
Os12g0180100 Major facilitator superfamily protein 282 4e-76
Os11g0186800 Major facilitator superfamily protein 272 5e-73
Os01g0852200 Major facilitator superfamily protein 258 5e-69
AK108528 174 2e-43
Os09g0556400 Major facilitator superfamily MFS_1 protein 152 5e-37
>Os01g0279700 Major facilitator superfamily protein
Length = 529
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/529 (84%), Positives = 446/529 (84%)
Query: 1 MLYLLPLSVSCRVPGSPPAPRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVRSNTXX 60
MLYLLPLSVSCRVPGSPPAPRSR TDVRSNT
Sbjct: 1 MLYLLPLSVSCRVPGSPPAPRSRRFLDPGGGRGVGDGLGGVRVFRRRALRGTDVRSNTSS 60
Query: 61 XXXRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPKRW 120
RK FPKRW
Sbjct: 61 SSSRKGRHDDARHDGGYGDDGDAGALLASVRRLLLSGSAQDDAAEGEAEEDEQGQFPKRW 120
Query: 121 AIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWA 180
AIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWA
Sbjct: 121 AIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWA 180
Query: 181 DTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWV 240
DTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWV
Sbjct: 181 DTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWV 240
Query: 241 PVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYS 300
PVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYS
Sbjct: 241 PVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYS 300
Query: 301 SPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTW 360
SPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTW
Sbjct: 301 SPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTW 360
Query: 361 MPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGF 420
MPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGF
Sbjct: 361 MPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGF 420
Query: 421 LGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG 480
LGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG
Sbjct: 421 LGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG 480
Query: 481 VLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529
VLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID
Sbjct: 481 VLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529
>Os09g0570400 Major facilitator superfamily protein
Length = 591
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/414 (83%), Positives = 372/414 (89%)
Query: 116 FPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIA 175
FPKRW +V LCF +FLLCNMDRVNMSIAILPMS+EFGW+P TVGLIQSSFFWGYLLTQI
Sbjct: 178 FPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQIL 237
Query: 176 GGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNI 235
GGIWAD GGK VLGFGV+WWSIAT LTP AAK+GLPFLLV RAFMG+GEGVAMPAMNNI
Sbjct: 238 GGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMNNI 297
Query: 236 LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWA 295
LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLI FGWPSVFY+FGSLG WF+ W
Sbjct: 298 LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSVWFALWQ 357
Query: 296 SKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGTF 355
KA+SSP EDP +S EK+ I +T EPV IPW LILSKPPVWALIVSHFCHNWGTF
Sbjct: 358 RKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIVSHFCHNWGTF 417
Query: 356 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIM 415
ILLTWMPTYYNQVLKFNLTESGL CVLPWLTMA+ AN GGWIADTLV RG+S+T VRKIM
Sbjct: 418 ILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRGVSITNVRKIM 477
Query: 416 QSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGL 475
QSIGFLGPA FLT LS + +PAMAVLCMACSQG+DAFSQSGLYSNHQDIGPRYAGVLLGL
Sbjct: 478 QSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 537
Query: 476 SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529
SNTAGVLAGVFGTAATGYILQ GSWD VF+V+VVLY+VGT+VWN+FSTGEK+++
Sbjct: 538 SNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVVLYIVGTVVWNVFSTGEKVLE 591
>Os05g0451100 Major facilitator superfamily protein
Length = 535
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/422 (40%), Positives = 243/422 (57%), Gaps = 13/422 (3%)
Query: 116 FPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIA 175
P+R +V L + LLCN DRV MS+A++P +A++GW+ +G++QSSF WGY+ + +
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178
Query: 176 GGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNI 235
GG AD GGK V+ WS+AT LTP+AA LL RA G+ EGVA P M+
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238
Query: 236 LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWA 295
L KW P ER+ ++ + G +LG+V +P+++ + G F F SLG W S W
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298
Query: 296 SKAYSSPLEDPGISAEEKKLI-----TSQTTGGE--PVKEIPWGLILSKPPVWALIVSHF 348
S PL+ IS E +LI S+ G + ++E ILSK +WA+IV++
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLRE-----ILSKIEMWAIIVANV 353
Query: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408
+NWG F+LL+WMP Y+ V NL ++ F +PW MA+S G AD L+ G SV
Sbjct: 354 VNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSV 413
Query: 409 TTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRY 468
VRKIMQSIGF+GP L L +P++A + M + +FSQ+G + N QDI P+Y
Sbjct: 414 ALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKY 473
Query: 469 AGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVVLYLVGTLVWNLFSTGEKI 527
AG L GL+N G +A + T TGY +Q GS+ ++ VLY T+ +N ++TG+ I
Sbjct: 474 AGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLI 533
Query: 528 ID 529
D
Sbjct: 534 FD 535
>Os12g0180100 Major facilitator superfamily protein
Length = 439
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 248/434 (57%), Gaps = 23/434 (5%)
Query: 116 FPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIA 175
FPKR+ IV L F +C ++RV SIA + G N G+I S F++GY+L+QI
Sbjct: 9 FPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQIP 68
Query: 176 GGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNI 235
GG A +GG+ VL + WS+ L P K + L+++R F+GV +G PA++ +
Sbjct: 69 GGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHTV 127
Query: 236 LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWA 295
L++WVP ERSRS++L SGMYLG+ G+ F P L+ + G SVF+ LGV W W
Sbjct: 128 LAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIWL 187
Query: 296 SKAYSSPLED------PGISAEEKKLITSQTTG--GEPVKEIPWGLILSKPPVWALIVSH 347
+ P D P +++ EK I +Q G +IPW I+ PVWA++V++
Sbjct: 188 KFSSEPPRTDLPKVSMPKVASREK--IKAQAGGVVAPRTVKIPWRRIIFSLPVWAIVVNN 245
Query: 348 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRG-L 406
F ++ ++L+ W+PTY+ L+ +L + G +LP+ M + +N GG +AD L++R L
Sbjct: 246 FTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRIL 305
Query: 407 SVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGP 466
S+T RK++ +IGF+ A L L +P+ VLC + S G A ++G NH D+ P
Sbjct: 306 SITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAP 365
Query: 467 RYAGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVVLYLVGT 515
++AG+++G+SNTAG LAG+ G TG IL+ +W VF V L + +
Sbjct: 366 KFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSS 425
Query: 516 LVWNLFSTGEKIID 529
+++ +FSTGEKI +
Sbjct: 426 IIFLIFSTGEKIFE 439
>Os11g0186800 Major facilitator superfamily protein
Length = 428
Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/427 (36%), Positives = 245/427 (57%), Gaps = 14/427 (3%)
Query: 116 FPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIA 175
FPKR+AIV L F +C ++RV SIA + G N G+I S F++GY+L+QI
Sbjct: 3 FPKRYAIVLLTFMCTNVCYIERVGFSIAYTVAADAVGTNQANKGMILSMFYYGYVLSQIP 62
Query: 176 GGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNI 235
GG A +GG+ VL + WS A+ P + L+++R +GV +G+ P+++ +
Sbjct: 63 GGWAAQRLGGRLVLLLSFVLWSSICAVVPLDPNRVI-LLVLSRLLVGVAQGLIFPSIHTV 121
Query: 236 LSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWA 295
L++WVP ERSRS++L SGMYLG+ G+ P L+ N G SVF LGV W W
Sbjct: 122 LAQWVPPQERSRSVSLTTSGMYLGAACGMLLLPSLVKNMGPQSVFSVEAMLGVAWLLIWF 181
Query: 296 SKAYSSPLED-PGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354
A P D P +++++K + + +IPW IL P+WA++V++F ++
Sbjct: 182 KFASDPPRTDLPKVASKDKMKVQTGGIMAPRTVKIPWARILFSLPIWAIVVNNFTFHYAL 241
Query: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRG-LSVTTVRK 413
++L+ W+PTY+ L+ +L + G +LP+L M + +N GG +AD L++R LSVT RK
Sbjct: 242 YVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKILSVTKTRK 301
Query: 414 IMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLL 473
++ ++GF+ A L L +P+ A+ C + S G A ++G NH D+ P++AG+++
Sbjct: 302 LLNTVGFVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNHMDVAPKFAGIVM 361
Query: 474 GLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVVLYLVGTLVWNLFS 522
G+SNTAG LAG+ G TG IL+ SW VF V L + + ++ +FS
Sbjct: 362 GISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFSSFIFLIFS 421
Query: 523 TGEKIID 529
TGEKI +
Sbjct: 422 TGEKIFE 428
>Os01g0852200 Major facilitator superfamily protein
Length = 353
Score = 258 bits (660), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 207/348 (59%), Gaps = 10/348 (2%)
Query: 189 LGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRS 248
+ +GV WS+AT L+P+AA L L TR +G+ EGVA+P+MNN++ +W P +ERS +
Sbjct: 1 MAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSA 60
Query: 249 LALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYSSPLEDPGI 308
+ + +G LG+ GL SP+++ G F FG G W W S +P E+ I
Sbjct: 61 VGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQI 120
Query: 309 SAEE-------KKLITSQTTGGEPVKEIP-WGLILSKPPVWALIVSHFCHNWGTFILLTW 360
SA E +KL+ +Q+ GGE ++++P + +LSK P WALI ++ H+WG F++L+W
Sbjct: 121 SAHELDYITRGQKLVKTQS-GGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSW 179
Query: 361 MPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGF 420
MP Y+ + NL E+ F LPW+ MAV G ++D L+ G S+T RKIMQ+IGF
Sbjct: 180 MPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGF 239
Query: 421 LGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG 480
+GP L L+ SP +A + + G +F SG N Q+I P+YAGVL G+SNTAG
Sbjct: 240 VGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAG 299
Query: 481 VLAGVFGTAATGYILQH-GSWDDVFKVSVVLYLVGTLVWNLFSTGEKI 527
A + GT G+ + GS+ ++ +LY TL W++F+TGE++
Sbjct: 300 TFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 347
>AK108528
Length = 381
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 176/364 (48%), Gaps = 27/364 (7%)
Query: 183 VGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPV 242
+G K VL V+ SI T P+ A+ L V R +G GV PA + W P
Sbjct: 3 IGPKMVLALSVLVSSIFTIALPWFARFSPIALSVCRFIIGAAHGVIWPAFAGFWASWAPS 62
Query: 243 SERSRSLALVYSGMYLGSVTGLAFSPLL-IHNF--GWPSVFYSFGSLGVFWFSTWASKAY 299
+ERSR + +G +G+V L L I+ F GWPS+FY FG+LG+ W W A
Sbjct: 63 NERSRLIGTGNAGAQIGNVIALPLGGFLCINGFDGGWPSIFYVFGALGLVWTVIWFVFAS 122
Query: 300 SSPLEDPGISAEEKKLITSQTTG-----GEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354
+SP E+ I EK+ I +T E PW I+ P WA+ + H C NWGT
Sbjct: 123 NSPEENRFIGEAEKEYILEETKNTRSSFEESESGAPWCAIMKSIPAWAIFIGHSCSNWGT 182
Query: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADT-LVSRGLSVTTVRK 413
++ LT +P Y +VLKF++ +G LP+L G I D L+ S T VRK
Sbjct: 183 YLFLTSLPLYMKEVLKFDIKSNGALSALPYLVFWAFILLAGNIGDYFLMKLKWSKTKVRK 242
Query: 414 IMQSIGF-------LGPAFFLTQLSHIDSPAMAV--LCMACSQGTDAFSQSGLYSNHQDI 464
I S+ F LG AF ++ ++ + V C+ G +G N+ DI
Sbjct: 243 IFNSLAFFVPMLAVLGLAFVTCEIKYVGVALLTVGLAFTGCAYG------AGFLVNYNDI 296
Query: 465 GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQHG---SWDDVFKVSVVLYLVGTLVWNLF 521
Y+GV+ G+ NT + G+ + G + ++ W VF ++ V+YL+G +V +F
Sbjct: 297 SGSYSGVVFGIGNTFATIPGIIAPSLVGLLTKNNLQEEWRIVFIITAVVYLIGAIVLLIF 356
Query: 522 STGE 525
S+GE
Sbjct: 357 SSGE 360
>Os09g0556400 Major facilitator superfamily MFS_1 protein
Length = 219
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 117/205 (57%), Gaps = 6/205 (2%)
Query: 326 VKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 385
+K++PW VWA+I +HFC +WG + L+W+PT++++ L NLTE+ VLP L
Sbjct: 4 LKDVPWREFFKSKAVWAMIYAHFCGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPL 63
Query: 386 TMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGFLGPAFFLTQLSHID---SPAMAVLC 442
+ + AD L+S G+ T VRKI Q+I FL PA F+ LS +D P V
Sbjct: 64 GSMIITSIAAPFADNLISNGVDTTKVRKICQTIAFLSPATFM-MLSSVDLGVPPWEIVAF 122
Query: 443 MACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWD 501
+ +F+ SGLY HQDI YA +LLG++NT G + G+ G A TGY+L SW
Sbjct: 123 LTSGLALSSFALSGLYCTHQDISREYASILLGITNTVGAVPGIVGVALTGYLLDTTHSWS 182
Query: 502 -DVFKVSVVLYLVGTLVWNLFSTGE 525
+F S+ YL GT VW F++ E
Sbjct: 183 ISLFAPSIFFYLTGTAVWLAFASSE 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,476,093
Number of extensions: 617731
Number of successful extensions: 2015
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 8
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)