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Os12g0180100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major facilitator superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.35 (0.0194) R2 : 0.024
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.0408) R2dN8 : 0.031 R2N8 : 0.024
σ : 0.365
deviance : 61.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.51 0.344 8.32 0.378 0.0624 0.299 -0.312 -0.788 0.254 11.2 19.86 1322 -- --
54.94 0.345 8.32 0.382 0.0617 0.286 -0.369 -- 0.255 11 20 1295 -- --
53.81 0.342 8.32 0.379 0.066 0.295 -- -1 0.256 10.2 19.98 1302 -- --
55.42 0.347 8.32 0.345 0.0463 0.322 -- -- 0.254 9.86 19.87 1240 -- --
53.5 0.341 8.33 0.371 -- 0.324 -- -0.944 0.247 -- 19.91 1225 -- --
57.56 0.356 8.34 0.295 0.115 -- -0.389 -- 0.169 11 -- -- -- --
58.16 0.357 8.34 0.278 0.121 -- -- -- 0.167 10.1 -- -- -- --
55.44 0.347 8.34 0.317 -- 0.312 -- -- 0.236 -- 19.89 1231 -- --
57.96 0.355 8.32 -- 0.0463 0.32 -- -- 0.253 9.04 19.98 1240 -- --
59.05 0.359 8.34 0.277 -- -- -- -- 0.167 -- -- -- -- --
60.2 0.363 8.35 -- 0.12 -- -- -- 0.136 9.97 -- -- -- --
57.77 0.354 8.34 -- -- 0.321 -- -- 0.201 -- 20 1238 -- --
61.06 0.365 8.35 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.45 radiation 20.0 1440 < th dose independent rect. 11 1
3 51.80 radiation 30.0 1440 < th dose dependent rect. 11 1
6 52.27 wind 1.0 43200 < th dose independent rect. 2 2
7 52.29 wind 1.0 43200 > th dose independent rect. 2 2
11 52.51 wind 1.0 43200 < th dose dependent rect. 2 1
15 52.65 temperature 20.0 1440 > th dose independent rect. 21 1
16 52.67 humidity 50.0 43200 > th dose independent rect. 6 2
17 52.69 temperature 20.0 90 < th dose independent rect. 15 14
18 52.71 temperature 20.0 1440 < th dose independent rect. 21 1
19 52.71 temperature 20.0 90 < th dose independent rect. 13 16
22 52.74 temperature 20.0 90 > th dose independent rect. 12 14
25 52.78 radiation 20.0 1440 > th dose independent rect. 11 2
31 52.80 radiation 10.0 1440 > th dose dependent rect. 11 2
37 52.84 temperature 20.0 90 < th dose independent sin 14 NA
40 52.86 temperature 20.0 90 < th dose independent rect. 17 12
42 52.87 humidity 50.0 43200 > th dose independent rect. 21 12
44 52.89 humidity 50.0 43200 < th dose independent rect. 7 1
47 52.90 humidity 50.0 43200 < th dose independent rect. 4 5
49 52.90 humidity 50.0 43200 < th dose independent rect. 21 12
54 52.91 temperature 20.0 90 > th dose independent sin 13 NA
59 52.91 radiation 10.0 1440 < th dose dependent rect. 8 7
63 52.94 temperature 20.0 1440 > th dose independent rect. 20 3
71 52.95 humidity 50.0 43200 > th dose independent rect. 23 10
84 53.01 temperature 20.0 270 > th dose independent rect. 14 12
95 53.03 humidity 50.0 43200 > th dose independent rect. 5 4
104 53.04 radiation 1.0 1440 < th dose independent rect. 13 1
108 53.04 temperature 10.0 43200 < th dose dependent rect. 4 1
109 53.04 radiation 1.0 1440 < th dose dependent rect. 13 1
117 53.06 humidity 50.0 43200 > th dose independent rect. 2 7
129 53.07 radiation 1.0 4320 < th dose dependent rect. 4 1
136 53.10 temperature 10.0 43200 < th dose independent rect. 4 1
161 53.16 radiation 1.0 1440 < th dose independent rect. 11 3
166 53.16 radiation 1.0 1440 < th dose dependent rect. 11 3
176 53.18 radiation 30.0 14400 > th dose independent rect. 7 1
213 53.22 radiation 1.0 1440 > th dose independent rect. 11 3
219 53.22 humidity 50.0 43200 < th dose dependent rect. 7 1
222 53.23 temperature 10.0 43200 > th dose independent rect. 4 1
236 53.26 radiation 1.0 1440 > th dose independent rect. 13 1
245 53.27 radiation 1.0 4320 < th dose dependent rect. 19 10
246 53.28 temperature 20.0 90 > th dose independent rect. 20 11
259 53.30 radiation 1.0 1440 > th dose independent rect. 11 1
302 53.34 radiation 20.0 1440 < th dose independent rect. 23 15
316 53.36 temperature 20.0 1440 > th dose independent rect. 6 1
349 53.41 precipitation 0.1 43200 > th dose dependent rect. 20 1
371 53.43 temperature 20.0 90 > th dose independent rect. 20 7
402 53.45 radiation 30.0 4320 < th dose independent rect. 16 16
497 53.53 radiation 10.0 1440 < th dose dependent rect. 7 17
498 53.54 radiation 10.0 1440 < th dose independent rect. 13 4
502 53.54 humidity 50.0 720 > th dose independent rect. 11 12
540 53.55 radiation 30.0 14400 > th dose dependent rect. 7 1
561 53.56 humidity 50.0 1440 > th dose independent rect. 21 19
579 53.57 humidity 50.0 1440 > th dose independent rect. 11 5
584 53.57 humidity 50.0 1440 > th dose independent rect. 17 22
585 53.57 wind 1.0 1440 < th dose dependent rect. 6 1
593 53.58 humidity 50.0 1440 > th dose independent rect. 6 10
594 53.58 humidity 50.0 1440 > th dose independent rect. 2 14
602 53.59 radiation 10.0 1440 < th dose independent rect. 13 6
604 53.59 radiation 10.0 1440 < th dose independent rect. 13 10
609 53.59 humidity 50.0 720 > th dose independent rect. 9 14
610 53.59 radiation 10.0 1440 < th dose independent rect. 13 14
617 53.59 humidity 50.0 43200 < th dose dependent rect. 20 13
635 53.60 radiation 1.0 4320 < th dose independent rect. 18 11
657 53.61 precipitation 0.1 43200 < th dose independent rect. 20 1
666 53.61 precipitation 0.1 43200 < th dose dependent rect. 20 1
668 53.61 precipitation 0.1 43200 > th dose dependent rect. 20 4
673 53.62 humidity 50.0 1440 > th dose independent sin 5 NA
726 53.65 radiation 20.0 1440 < th dose independent sin 2 NA
729 53.65 temperature 20.0 270 < th dose independent rect. 21 5
732 53.65 humidity 50.0 720 > th dose independent rect. 11 10
737 53.65 temperature 10.0 43200 < th dose dependent sin 2 NA
743 53.66 radiation 10.0 1440 < th dose independent sin 19 NA
768 53.67 precipitation 0.1 43200 > th dose independent rect. 20 1
785 53.68 radiation 1.0 4320 > th dose independent rect. 8 1
794 53.68 radiation 10.0 1440 < th dose independent rect. 9 10
800 53.68 radiation 10.0 1440 < th dose independent rect. 9 14
805 53.68 radiation 10.0 1440 < th dose independent rect. 9 18
829 53.69 precipitation 0.1 43200 > th dose independent rect. 19 5
861 53.70 precipitation 0.1 43200 < th dose independent rect. 19 5
871 53.70 temperature 10.0 43200 > th dose independent rect. 2 15
879 53.70 radiation 10.0 720 < th dose independent rect. 13 19
884 53.70 radiation 10.0 1440 < th dose dependent sin 0 NA
885 53.70 precipitation 0.1 43200 < th dose dependent rect. 19 5
895 53.71 temperature 20.0 10 < th dose independent rect. 23 6
910 53.71 temperature 10.0 43200 > th dose independent rect. 2 13
920 53.71 temperature 20.0 90 > th dose independent rect. 12 19
939 53.72 humidity 80.0 14400 > th dose dependent rect. 24 1
974 53.73 wind 5.0 1440 > th dose dependent rect. 8 8
998 53.75 wind 9.0 4320 < th dose independent rect. 17 4