Os09g0570400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os09g0570400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.07 | 0.319 | 13.6 | -0.515 | 0.524 | 0.409 | -0.815 | -0.914 | -0.667 | 21.6 | 10.05 | 1414 | -- | -- |
| 47.54 | 0.321 | 13.5 | -0.427 | 0.527 | 0.429 | -0.845 | -- | -0.644 | 21.4 | 10.61 | 1437 | -- | -- |
| 47.92 | 0.322 | 13.6 | -0.548 | 0.513 | 0.394 | -- | -1.38 | -0.681 | 21.7 | 10.06 | 1322 | -- | -- |
| 50.01 | 0.329 | 13.5 | -0.329 | 0.536 | 0.354 | -- | -- | -0.595 | 21.9 | 10.25 | 1450 | -- | -- |
| 50.28 | 0.33 | 13.5 | -0.557 | -- | 0.755 | -- | -1.61 | -0.727 | -- | 10 | 1051 | -- | -- |
| 51.65 | 0.337 | 13.5 | -0.249 | 0.541 | -- | -0.794 | -- | -0.496 | 21.7 | -- | -- | -- | -- |
| 53.96 | 0.344 | 13.5 | -0.22 | 0.543 | -- | -- | -- | -0.495 | 21.9 | -- | -- | -- | -- |
| 54.61 | 0.344 | 13.5 | -0.403 | -- | 0.703 | -- | -- | -0.694 | -- | 10.01 | 1063 | -- | -- |
| 52.39 | 0.337 | 13.5 | -- | 0.511 | 0.334 | -- | -- | -0.572 | 21.5 | 7.797 | 1494 | -- | -- |
| 71.63 | 0.395 | 13.5 | -0.214 | -- | -- | -- | -- | -0.495 | -- | -- | -- | -- | -- |
| 55.24 | 0.348 | 13.5 | -- | 0.542 | -- | -- | -- | -0.471 | 21.9 | -- | -- | -- | -- |
| 53.43 | 0.34 | 13.5 | -- | -- | 0.975 | -- | -- | -0.659 | -- | 3.451 | 1137 | -- | -- |
| 72.84 | 0.398 | 13.5 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.87 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 2 | 43.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 4 | 43.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 7 | 43.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 27 | 43.29 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 47 | 43.48 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 50 | 43.52 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 71 | 43.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 108 | 44.09 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 14 |
| 144 | 44.43 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 145 | 44.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 157 | 44.49 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 158 | 44.50 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 159 | 44.50 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 14 |
| 199 | 44.72 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 233 | 44.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 236 | 44.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 241 | 44.84 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 256 | 44.90 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 259 | 44.92 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 265 | 44.94 | humidity | 50.0 | 30 | > th | dose dependent | sin | 7 | NA |
| 275 | 44.99 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 280 | 45.01 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 342 | 45.19 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 371 | 45.22 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 9 |
| 405 | 45.26 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 413 | 45.28 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 414 | 45.28 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 417 | 45.28 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 428 | 45.31 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 433 | 45.32 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 434 | 45.32 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 435 | 45.32 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 440 | 45.33 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 450 | 45.34 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 21 |
| 481 | 45.38 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 498 | 45.40 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 515 | 45.42 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 540 | 45.45 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 601 | 45.52 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 602 | 45.53 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 614 | 45.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 615 | 45.54 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 621 | 45.55 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 631 | 45.57 | humidity | 80.0 | 10 | > th | dose independent | sin | 4 | NA |
| 637 | 45.57 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 653 | 45.59 | humidity | 90.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 662 | 45.60 | radiation | 20.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 685 | 45.61 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 20 | 13 |
| 752 | 45.67 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 839 | 45.74 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 858 | 45.75 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 859 | 45.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 905 | 45.77 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 950 | 45.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 5 |
| 963 | 45.81 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 964 | 45.81 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 978 | 45.82 | radiation | 10.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 979 | 45.82 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 981 | 45.82 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 9 |
| 987 | 45.83 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 8 |
| 998 | 45.84 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |