Os01g0852200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os01g0852200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.01 | 0.329 | 10.6 | 1.05 | 1.46 | 0.949 | -1.56 | 0.0736 | -0.00534 | 21.1 | 25.7 | 12 | -- | -- |
| 49 | 0.326 | 10.6 | 1.05 | 1.46 | 0.956 | -1.56 | -- | -0.00661 | 21.1 | 25.71 | 13 | -- | -- |
| 57.23 | 0.352 | 10.6 | 1.17 | 1.46 | 0.933 | -- | 0.701 | 0.00329 | 21.2 | 25.5 | 13 | -- | -- |
| 57.43 | 0.353 | 10.6 | 1.09 | 1.47 | 0.995 | -- | -- | -0.0156 | 21.2 | 25.55 | 13 | -- | -- |
| 130.73 | 0.533 | 10.7 | 0.541 | -- | 1.63 | -- | -1.62 | -0.326 | -- | 21.63 | 602 | -- | -- |
| 63.72 | 0.374 | 10.6 | 1.19 | 1.48 | -- | -1.66 | -- | 0.0436 | 20.3 | -- | -- | -- | -- |
| 72.22 | 0.398 | 10.6 | 1.24 | 1.48 | -- | -- | -- | 0.0429 | 20.3 | -- | -- | -- | -- |
| 132.3 | 0.536 | 10.6 | 0.803 | -- | 1.64 | -- | -- | -0.245 | -- | 18.7 | 578 | -- | -- |
| 84.52 | 0.428 | 10.7 | -- | 1.41 | 1.27 | -- | -- | -0.272 | 21.6 | 21.4 | 119 | -- | -- |
| 194.17 | 0.651 | 10.6 | 1.23 | -- | -- | -- | -- | 0.0264 | -- | -- | -- | -- | -- |
| 112.66 | 0.497 | 10.6 | -- | 1.48 | -- | -- | -- | -0.0951 | 20.3 | -- | -- | -- | -- |
| 146.42 | 0.564 | 10.7 | -- | -- | 2.11 | -- | -- | -0.387 | -- | 16.26 | 607 | -- | -- |
| 233.98 | 0.714 | 10.6 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 3 | 37.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 33 | 40.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 38 | 40.19 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 41 | 40.32 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 53 | 40.61 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 59 | 40.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 102 | 41.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 165 | 43.26 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 201 | 43.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 227 | 44.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 274 | 44.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 295 | 44.85 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 9 |
| 307 | 44.95 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 312 | 45.01 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 347 | 45.32 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 440 | 46.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 477 | 46.31 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 586 | 46.84 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 609 | 46.94 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 741 | 47.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 958 | 48.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |