BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0229900 Os01g0229900|AK065429
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0229900 Similar to Shaggy-related protein kinase dzeta... 460 e-130
Os01g0233900 Ubiquitin-conjugating enzyme, E2 domain contai... 315 2e-86
Os09g0294300 Ubiquitin-conjugating enzyme, E2 domain contai... 130 1e-30
Os05g0232500 Ubiquitin-conjugating enzyme, E2 domain contai... 127 9e-30
Os01g0232500 Ubiquitin-conjugating enzyme, E2 domain contai... 127 1e-29
Os01g0677500 123 1e-28
Os05g0557600 Ubiquitin-conjugating enzyme, E2 domain contai... 122 3e-28
Os01g0125900 Ubiquitin-conjugating enzyme, E2 domain contai... 114 5e-26
Os05g0153100 99 3e-21
>Os01g0229900 Similar to Shaggy-related protein kinase dzeta (EC 2.7.1.-)
(ASK-dzeta)
Length = 258
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/230 (95%), Positives = 220/230 (95%)
Query: 29 AERDHLRQTRGAFCVKWVLRMVLNKVLELFCVXXXXXXXXXXAINPLCKVAAPHPTANVS 88
AERDHLRQTRGAFCVKWVLRMVLNKVLELFCV AINPLCKVAAPHPTANVS
Sbjct: 29 AERDHLRQTRGAFCVKWVLRMVLNKVLELFCVKKKDSKKKGKAINPLCKVAAPHPTANVS 88
Query: 89 TNNSLLDPFSTGNGTVLSVQKHEPECSSVISSMTRTEYGFESDGCNSFSHFDVQDFSDHY 148
TNNSLLDPFSTGNGTVLSVQKHEPECSSVISSMTRTEYGFESDGCNSFSHFDVQDFSDHY
Sbjct: 89 TNNSLLDPFSTGNGTVLSVQKHEPECSSVISSMTRTEYGFESDGCNSFSHFDVQDFSDHY 148
Query: 149 YAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRAAIVGPAETPYHDGL 208
YAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRAAIVGPAETPYHDGL
Sbjct: 149 YAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRAAIVGPAETPYHDGL 208
Query: 209 FFFDVHFPSEYPQSHRLTHVHIPSLMSYESPMHTCHGKWSSIPSSVQLQA 258
FFFDVHFPSEYPQSHRLTHVHIPSLMSYESPMHTCHGKWSSIPSSVQLQA
Sbjct: 209 FFFDVHFPSEYPQSHRLTHVHIPSLMSYESPMHTCHGKWSSIPSSVQLQA 258
>Os01g0233900 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 374
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/186 (83%), Positives = 159/186 (85%), Gaps = 1/186 (0%)
Query: 49 MVLNKVLELFCVXXXXXXXXXXAINPLCKVAAPHPTANVSTNNSLLDPFSTGNGTVLSVQ 108
MVLNKVLELFCV AINPLCKVAAPHPTANVSTNNSLLDPFS+GNGTVL VQ
Sbjct: 1 MVLNKVLELFCVKKKDSKKKGKAINPLCKVAAPHPTANVSTNNSLLDPFSSGNGTVLLVQ 60
Query: 109 KHEPECSSVISSMTRTEYGFESDGCNSFSHFDV-QDFSDHYYAKNSPGKTSKDWVKTIQN 167
KHEPECSSV+SSMTRTEYG ESDG N F+ FDV QDFSDHYYAKNSPGKTSKDWVKTIQN
Sbjct: 61 KHEPECSSVVSSMTRTEYGSESDGYNLFNQFDVVQDFSDHYYAKNSPGKTSKDWVKTIQN 120
Query: 168 EWRLLQKDLPESIYVRVYEDRIDLLRAAIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTH 227
EW+LLQKDLPESIYVR YEDRIDLLRAAIVGPA TPYHDGLFFFDV FPSEYPQS H
Sbjct: 121 EWKLLQKDLPESIYVRAYEDRIDLLRAAIVGPAGTPYHDGLFFFDVRFPSEYPQSPPKVH 180
Query: 228 VHIPSL 233
H L
Sbjct: 181 YHSGGL 186
>Os09g0294300 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 433
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 81/111 (72%), Gaps = 15/111 (13%)
Query: 135 SFSHFD-VQDFSDHYYAKNSPG------KTSKDWVKTIQNEWRLLQKDLPESIYVRVYED 187
+F FD V D SDHYY+ + G K SKDWV+ IQ+EW++L+KDLP +I+VRVYED
Sbjct: 136 AFKQFDTVTDHSDHYYSMSGKGNVPEVKKPSKDWVRRIQHEWKVLEKDLPGTIFVRVYED 195
Query: 188 RIDLLRAAIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVHIPSLMSYES 238
R++LLRA IVGPA TPYHDGLFFFDV+FPS+YP+ P L++Y S
Sbjct: 196 RMELLRAVIVGPAGTPYHDGLFFFDVYFPSQYPKK--------PPLVNYRS 238
>Os05g0232500 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 467
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 136 FSHFDV-QDFSDHYYAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRA 194
F FDV ++FSDH+YA GKT KDW K IQ +W+LL+KDLP SIYVRV E+R+DLLRA
Sbjct: 157 FKQFDVVENFSDHHYADKPVGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRA 216
Query: 195 AIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVHIPSL 233
I+GP TPYHDGLFFFD F S YP + + + H L
Sbjct: 217 VIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGL 255
>Os01g0232500 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 485
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 136 FSHFD-VQDFSDHYYAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRA 194
F FD V++FSDH+YA S T +DWVK IQ++W+LL+KDLP SIYVRV EDR+DLLRA
Sbjct: 158 FKQFDTVKNFSDHHYAATSGDVTKRDWVKRIQHDWKLLEKDLPASIYVRVAEDRMDLLRA 217
Query: 195 AIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVHIPSL 233
AI+GP TPYHDGLFFFD+ F + YP + + H L
Sbjct: 218 AIIGPKGTPYHDGLFFFDIQFSNSYPANPPSVYYHSGGL 256
>Os01g0677500
Length = 389
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 76/104 (73%), Gaps = 13/104 (12%)
Query: 136 FSHFD-VQDFSDHYYAK---------NSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVY 185
F FD V D SDH+Y+ N PGK DWVK IQ+EW++L+KDLP++I+VRVY
Sbjct: 183 FKQFDIVGDHSDHFYSNPRERKVQVVNEPGK---DWVKRIQHEWKVLEKDLPDNIFVRVY 239
Query: 186 EDRIDLLRAAIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVH 229
EDR++LLRA I+GP+ TPYHDGLFFFDV+FP +YP++ L H
Sbjct: 240 EDRLELLRAVIIGPSGTPYHDGLFFFDVYFPPQYPRNPLLVIYH 283
>Os05g0557600 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 509
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 15/112 (13%)
Query: 134 NSFSHFD-VQDFSDHYYAK------NSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYE 186
++F FD V D SDHYY+K K SK+W K IQ+EW++L+KDLP++I+VR YE
Sbjct: 211 SAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYE 270
Query: 187 DRIDLLRAAIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVHIPSLMSYES 238
DR+DLLRA I GPA TPYHDGLFFFD++FP YP +P L++Y S
Sbjct: 271 DRMDLLRAVITGPAGTPYHDGLFFFDIYFPPHYPS--------VPPLVNYRS 314
>Os01g0125900 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 1063
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 129 ESDGCNSFSHFDVQDFS-DHYYAKN-SPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYE 186
+SDG F HFDVQ DH+Y +N + G + WVK +Q EW +L+K+LP+ IYVRV+E
Sbjct: 776 DSDG---FKHFDVQQCPPDHHYLENMAQGTGGRKWVKKVQQEWNILEKNLPDYIYVRVFE 832
Query: 187 DRIDLLRAAIVGPAETPYHDGLFFFDVHFPSEYPQ 221
DR+DL+RA I+G + TPY DGLFFFD H P E+PQ
Sbjct: 833 DRMDLIRAVIIGASGTPYQDGLFFFDFHLPPEFPQ 867
>Os05g0153100
Length = 1045
Score = 99.0 bits (245), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 137 SHFDV-QDFSDHYY--AKNSPGKTSKDWVKTIQNEWRLLQKD-LPESIYVRVYEDRIDLL 192
+HFDV Q DH++ K WVK +Q EW++L D LP +IYVR +EDR+DLL
Sbjct: 752 AHFDVVQCPPDHHFLDCKLEGAAHGNKWVKRVQKEWQILGNDNLPGTIYVRAFEDRMDLL 811
Query: 193 RAAIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVH 229
RAA+VG A +PYHDGLF FD+H P+ YP + + H
Sbjct: 812 RAAMVGAAGSPYHDGLFLFDLHLPATYPAAPPEVYYH 848
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,253,343
Number of extensions: 326455
Number of successful extensions: 677
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 10
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)