BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0108800 Os01g0108800|AK102103
(231 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0108800 Protein of unknown function DUF936, plant fami... 378 e-105
Os08g0541500 Protein of unknown function DUF936, plant fami... 125 3e-29
Os09g0516700 Protein of unknown function DUF936, plant fami... 125 3e-29
Os03g0181800 Protein of unknown function DUF936, plant fami... 119 3e-27
Os12g0120000 Protein of unknown function DUF936, plant fami... 72 3e-13
Os11g0120200 Protein of unknown function DUF936, plant fami... 72 3e-13
Os07g0588300 Protein of unknown function DUF936, plant fami... 70 1e-12
>Os01g0108800 Protein of unknown function DUF936, plant family protein
Length = 231
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/231 (85%), Positives = 197/231 (85%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD
Sbjct: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
Query: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLVVGTXX 120
SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLVVGT
Sbjct: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLVVGTPD 120
Query: 121 XXXXXXXXXXXXGSWGPENHAGILASPRVIKPTTLNFEDRTPVKEXXXXXXXXXXXXXXX 180
GSWGPENHAGILASPRVIKPTTLNFEDRTPVKE
Sbjct: 121 PATRAKPAAPRRGSWGPENHAGILASPRVIKPTTLNFEDRTPVKERPPAPSPARSTASSL 180
Query: 181 XXXXXVLPRITRSKSFVADRAPDHPKIPKSPFPAVRNPPLYTPSSIRLDSI 231
VLPRITRSKSFVADRAPDHPKIPKSPFPAVRNPPLYTPSSIRLDSI
Sbjct: 181 RKSSSVLPRITRSKSFVADRAPDHPKIPKSPFPAVRNPPLYTPSSIRLDSI 231
>Os08g0541500 Protein of unknown function DUF936, plant family protein
Length = 733
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 82/115 (71%), Gaps = 3/115 (2%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
M++L GVLLKLL M + K GEHR++LLQV IVPA L DL G FY+KVSD
Sbjct: 1 MASLVPGVLLKLLQHMNSDV-KVAGEHRSSLLQVVSIVPA-LAGSDLFTNQG-FYLKVSD 57
Query: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLV 115
SSH+ Y +LP Q DL+LS+ +QLGQF+H+DRL+ +PVP++ G RP+PGRH V
Sbjct: 58 SSHATYVSLPEEQHDLILSDTIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACV 112
>Os09g0516700 Protein of unknown function DUF936, plant family protein
Length = 463
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 82/115 (71%), Gaps = 3/115 (2%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
M++L GVL+KLL M K GEHR++LLQV IVPA L DL G FY+KVSD
Sbjct: 1 MASLVPGVLVKLLQHMNTDV-KVAGEHRSSLLQVVSIVPA-LAGSDLFTNQG-FYLKVSD 57
Query: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLV 115
SSH+ Y +LP Q DL+LS+K+QLGQF+H+DRL+ +PVP++ G RP+PGRH V
Sbjct: 58 SSHATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACV 112
>Os03g0181800 Protein of unknown function DUF936, plant family protein
Length = 573
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
M++L+ GVLLK+L + + K GE+R+ LLQV IVPA + +L P HG F++KVSD
Sbjct: 1 MASLTPGVLLKVLKNINSDV-KVCGEYRSILLQVISIVPA-ITGSELWPDHG-FFIKVSD 57
Query: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLV 115
SSHS Y +L +L+LSNKLQLGQF++++++ PVPV+VG RP+PGR+P +
Sbjct: 58 SSHSTYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIPVPVLVGVRPVPGRNPCI 112
>Os12g0120000 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDK--DLLPRHGKFYVKV 58
M+T++ GVLLKLL M + G+HR+ +LQVT +VPA L P +G F +++
Sbjct: 1 MATVTPGVLLKLLQAMHTDD-RVAGDHRSPVLQVTAVVPALTASTADSLWPSNG-FLLQL 58
Query: 59 SDSSHSIYATLPLPQADLVLSNKLQL-GQFVHLDRLDPGSPVPVIVGARPLP 109
SD HS Y AD ++S + QL G VHLDRL PVP VG RP+P
Sbjct: 59 SDGLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIRPVP 110
>Os11g0120200 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDK--DLLPRHGKFYVKV 58
M+T++ GVLLKLL M + G+HR+ +LQVT +VPA L P +G F +++
Sbjct: 1 MATVTPGVLLKLLQAMHTDD-RVAGDHRSPVLQVTAVVPALTASTADSLWPSNG-FLLQL 58
Query: 59 SDSSHSIYATLPLPQADLVLSNKLQL-GQFVHLDRLDPGSPVPVIVGARPLP 109
SD HS Y AD ++S + QL G VHLDRL PVP VG RP+P
Sbjct: 59 SDGLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIRPVP 110
>Os07g0588300 Protein of unknown function DUF936, plant family protein
Length = 640
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 31 LLQVTDIVPADLDDKDLLPRHGKFYVKVSDSSHSIYATLPLPQADLVLSNKLQLGQFVHL 90
LLQVT+I PA L + H FY+++SDS+ S Y +L DL+L+N L +GQ + +
Sbjct: 58 LLQVTNITPA-LSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEV 116
Query: 91 DRLDPGSPVPVIVGARPLPGRHPLV 115
+ L P P PV+ R LPGR+P +
Sbjct: 117 EHLVPSVPAPVLRHFRVLPGRYPCI 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,641,625
Number of extensions: 306630
Number of successful extensions: 819
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)