BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0621100 Os12g0621100|AK070737
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0621100 Similar to Filamentous flower-like yabby prote... 432 e-122
Os03g0650000 Similar to Yabby9 protein 238 2e-63
Os02g0643200 YABBY protein family protein 177 3e-45
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 169 1e-42
Os04g0536300 Similar to Yabby15 protein (Fragment) 169 1e-42
Os10g0508300 YABBY protein family protein 159 2e-39
Os03g0215200 Drooping leaf protein 127 7e-30
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 432 bits (1112), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA
Sbjct: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
Query: 61 LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120
LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA
Sbjct: 61 LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120
Query: 121 LHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPG 180
LHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPG
Sbjct: 121 LHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPG 180
Query: 181 HEGGKKLVDVDPIPTAPSSKKIQGFYS 207
HEGGKKLVDVDPIPTAPSSKKIQGFYS
Sbjct: 181 HEGGKKLVDVDPIPTAPSSKKIQGFYS 207
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/207 (64%), Positives = 151/207 (72%), Gaps = 22/207 (10%)
Query: 1 MSAQIAPA-EQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAP 59
MSAQI PA E VCYVHCNFCNTI AVSVP NSMLNIVTVRCGHCT+LLSVNLRGL+ + P
Sbjct: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
Query: 60 ALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQ 119
A +DH +L+ +S FR+ Y E+G SSS R+P + +S+ + E
Sbjct: 61 A-EDHLQDNLKMHNMS--FRE--NYSEYG----SSSRYGRVP------MMFSKNDT--EH 103
Query: 120 ALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSP 179
LH RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAH+PNIHFGL
Sbjct: 104 MLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG- 162
Query: 180 GHEGGKKLVDVDPIPTAPSSKKIQGFY 206
HE KKL D APS +K+Q Y
Sbjct: 163 SHESSKKL---DEAIGAPSPQKVQRLY 186
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 129/207 (62%), Gaps = 32/207 (15%)
Query: 6 APAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHH 65
+P EQ+CYVHCN C+TILAV VP +S+ VTVRCGHC NLLSVNLRGL+ APA +
Sbjct: 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAN 79
Query: 66 HHHLQESGLSG----------CFRDQSGYPEFGFSA-------------ASSSSKLRLPP 102
H S LS F+ S E SA AS++ +++PP
Sbjct: 80 QLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPP 139
Query: 103 AAAAMVSYSQQNQQLEQALHA---RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREA 159
A QQ +L + A RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREA
Sbjct: 140 AKPV-----QQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREA 194
Query: 160 FSTAAKNWAHYPNIHFGLSPGHEGGKK 186
FS AAKNWAH+P+IHFGL P +G KK
Sbjct: 195 FSAAAKNWAHFPHIHFGLMPD-QGFKK 220
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 113/178 (63%), Gaps = 20/178 (11%)
Query: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
MS Q +E VCYV+CN+CNTIL V+VP N NIVTVRCGHCT +LS++L H A
Sbjct: 1 MSVQFT-SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL-APFHQART 58
Query: 61 LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120
+QDH +Q G G FG S +S R A M + QQ +
Sbjct: 59 VQDHQ---VQNRGFQG--------NNFG-SYDIASRNQRTSTAMYPMPTSQQQVSPI--- 103
Query: 121 LHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLS 178
RPPEKRQRVPSAYNRFIKEEI+RIK +NP+ISHREAFS AAKNWAH P +HFGLS
Sbjct: 104 ---RPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS 158
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 126/203 (62%), Gaps = 22/203 (10%)
Query: 5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA---- 60
+A EQ+CYVHCNFC+TILAV VP +S+ VTVRCGHC NLLSVNLRGL+ A A
Sbjct: 25 LAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTAN 84
Query: 61 --------LQDHHHHHLQESGLS----GCFRDQSGYPEFGFSAASSSSKLRLPPA----A 104
L H L + S + P +S+SS PA +
Sbjct: 85 QLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMAS 144
Query: 105 AAMVSYSQQNQQLEQALHA-RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTA 163
AA + ++ QQ + A A R EKRQRVPSAYNRFIK+EI+RIKA+NPDI+HREAFS A
Sbjct: 145 AANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAA 204
Query: 164 AKNWAHYPNIHFGLSPGHEGGKK 186
AKNWAH+P+IHFGL P +G KK
Sbjct: 205 AKNWAHFPHIHFGLMP-DQGLKK 226
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 128/254 (50%), Gaps = 76/254 (29%)
Query: 9 EQVCYVHCNFCNTILAVS-----------------------------------VPGNSML 33
EQ+CYVHC++C+T+L VS VP +S+
Sbjct: 58 EQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLF 117
Query: 34 NIVTVRCGHCTNLLSVNLRGLM---------------------------HS---APALQD 63
VTVRCGHC++LL+VN+RGL+ HS APA
Sbjct: 118 ETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPP 177
Query: 64 HHHHHLQESGLSG----CFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQ 119
HHH L E + +Q G SAAS + AAA SQ ++
Sbjct: 178 HHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKE 237
Query: 120 -------ALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPN 172
A+ RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAH+P+
Sbjct: 238 PSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPH 297
Query: 173 IHFGLSPGHEGGKK 186
IHFGL P H+G KK
Sbjct: 298 IHFGLMPDHQGLKK 311
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 23/164 (14%)
Query: 5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH 64
++P+E +CYV C +CNT+LAV VP +++ VTV+CGHC NL ++ R M + DH
Sbjct: 4 VSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTDH 63
Query: 65 HHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHAR 124
Q + C R+Q LP +VS + +
Sbjct: 64 PLGPFQ-GPCTDCRRNQP-----------------LP-----LVSPTSNEGSPRAPFVVK 100
Query: 125 PPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWA 168
PPEK+ R+PSAYNRF++EEI+RIKA PDI HREAFS AAKNWA
Sbjct: 101 PPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,050,571
Number of extensions: 338622
Number of successful extensions: 1781
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 7
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)