Os03g0650000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yabby9 protein.
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Os03g0650000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yabby9 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.02 | 0.441 | 10.2 | -3.65 | 1.27 | -0.902 | 0.518 | -0.323 | -0.254 | 7.13 | 1014 | 6513 | -- | -- |
| 88.35 | 0.438 | 10.3 | -3.71 | 1.27 | -0.872 | 0.514 | -- | -0.264 | 7.15 | 1014 | 6500 | -- | -- |
| 88.72 | 0.439 | 10.2 | -3.63 | 1.27 | -0.893 | -- | -0.335 | -0.253 | 7.15 | 1014 | 6555 | -- | -- |
| 89.06 | 0.44 | 10.3 | -3.7 | 1.27 | -0.862 | -- | -- | -0.273 | 7.15 | 1013 | 6509 | -- | -- |
| 173.75 | 0.614 | 10.3 | -3.63 | -- | -0.988 | -- | -0.406 | -0.238 | -- | 1014 | 6396 | -- | -- |
| 110.14 | 0.492 | 10.2 | -3.36 | 1.28 | -- | 0.431 | -- | -0.0921 | 7.13 | -- | -- | -- | -- |
| 110.63 | 0.493 | 10.2 | -3.35 | 1.28 | -- | -- | -- | -0.0929 | 7.15 | -- | -- | -- | -- |
| 174.1 | 0.615 | 10.3 | -3.68 | -- | -0.912 | -- | -- | -0.253 | -- | 1014 | 6385 | -- | -- |
| 403.03 | 0.935 | 10.1 | -- | 1.23 | -0.289 | -- | -- | 0.302 | 7.56 | 1014 | 3868 | -- | -- |
| 197.82 | 0.657 | 10.2 | -3.32 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 405.77 | 0.942 | 10.1 | -- | 1.25 | -- | -- | -- | 0.28 | 7.32 | -- | -- | -- | -- |
| 482.43 | 1.02 | 10.2 | -- | -- | -0.613 | -- | -- | 0.24 | -- | 1014 | 4012 | -- | -- |
| 488.98 | 1.03 | 10.2 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.50 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 2 | 84.51 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 5 | 85.57 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 17 | 85.92 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 18 | 86.11 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 19 | 86.14 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 20 | 86.14 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 34 | 86.29 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 37 | 86.37 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 43 | 86.56 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 65 | 86.92 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 72 | 87.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 74 | 87.56 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 75 | 87.60 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 79 | 87.70 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 85 | 87.80 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 103 | 87.93 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 105 | 87.94 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 109 | 87.97 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 113 | 87.99 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 123 | 88.02 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 128 | 88.04 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 150 | 88.09 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 188 | 88.20 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 190 | 88.20 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 193 | 88.20 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 206 | 88.23 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 225 | 88.26 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 226 | 88.26 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 239 | 88.28 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 247 | 88.29 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 286 | 88.35 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 287 | 88.36 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 318 | 88.40 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 346 | 88.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 17 |
| 367 | 88.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 19 |
| 423 | 88.61 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 498 | 88.78 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 559 | 88.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 567 | 88.98 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 579 | 89.02 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 580 | 89.02 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 584 | 89.03 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 591 | 89.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 612 | 89.08 | wind | 5 | 43200 | < th | dose independent | sin | 15 | NA |
| 658 | 89.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 680 | 89.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 683 | 89.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 685 | 89.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 693 | 89.21 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 716 | 89.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 723 | 89.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 813 | 89.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 863 | 89.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 874 | 89.47 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 887 | 89.49 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 892 | 89.49 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 920 | 89.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 938 | 89.57 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |